BAC Information

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BAC

Clone NameMSMg01-097N11
Chromosome14 (Build37)
Map Location 99,092,526 - 99,092,762
singlet/doubletsinglet
Overlap genenone
Upstream geneDach1, LOC635593
Downstream geneLOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097N11.T7 (MSMg01no097_n11.b1)MSMg01-097N11.TJ (MSMg01no097_n11.g1)
ACCAG314171AG314172
length955717
length of high quality
(start - end)
---238 (74 - 311)
definitionCHROMAT_FILE: MSMg01no097_n11.b1 PHD_FILE: MSMg01no097_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:43 2005CHROMAT_FILE: MSMg01no097_n11.g1 PHD_FILE: MSMg01no097_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGTAAACCCCCANCCCACCCCANCCACGGACCGCAGCCAGGACGNNGGT
TCGNNNNNNTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
CAGAGGATCCCGCGGAATTCTCGGAAGCTTCCACGCACCCCCCTCACGCC
CATACNNCCCACTGATCTTATCCAAAGTCCCACCGACTCTCCATAAGACC
TCGCCTTGTCCCCGTCCAGCGGACTCCGCGANTTATTCTCTACACGCCGC
TCCCCATCTCCAGNCACACACCTCCATCTCAACTTTCAGGTCCTGTGCCC
TTTTACCCTGGGCACGGCCCTCTAGCATAGTCTGCATCCTCTGCAACATA
CCCGCATATCTAGAACGGCTCTCCCAGGACGTCCTGCTCACAGCTCAGCA
GCCACCAAGTCTTCCTCAGGGGGACTTGTTTTTCAACCCCCAGGTACACA
GCGAGGACACCGCTCCCCGACCAGACGATTCTCTTGACCCCCGCTATCGA
CGGAGAGCATATCTCGCCACCCCCGCCCATCGCCCCGCGCTTGACCCACC
CCGCCAACCTGAATTGCCCTTATCACTCTCTGAGCCTCACTCCCTGGCTC
AGCACACCTACCACTCTGGGGGGCGGACCCGGGGAGTGTGGGGACCCCCC
CCTGGGAGGGTGCCAGGGAGGCGCGAATCAACAAGGTGGGGCACCAAAAT
AAGAAGGCTGGGGTCGAGGCCGGTGCTAAAATGAAACACAACAGGGGGCG
CCGTGTGAGGGGCACAACCCTTGAACGGGGGACCTTTGGTGGGCACCAAA
AAAAACAAACTGGGGGCACAGTGGGGGTGAACAAAAATCCACCTTAGACA
AAACCGCGGGGAGAGTGGACGCCGCACAACGGCGGGGCGGAGGTGGTCCA
TCCCACCAGTTCTATGCTCCGTGGTCCAACAACACACACGGGGGGGGGGG
CGGCG
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTAGCTCACATTTAGATCAAGTGAAA
ACAGTTTTGTTGTTAAAGTATGATTCTTAAAAGTACAAACTTAAGATACG
GAAGTTGTGAATAACTCTTCAATTTCAAAGGACAATTAGCATTATGTTCC
TTCTGTTATTTGTCTTTAACATGATCCTACTTGCAGCTCAAAGGACGAAT
AAAATCCATTAAGAAGAGAGTTTAATATTGGTGATGTCATAAGACTGTAC
CCCAGGCAGCGGCTTCAGAGACTCATTACAGTTTTCCAGTCCTGACTCCT
GATTTCTTTGCCCTGAATTTACAGAATCAGAGAACCACCAACTGTTCACT
ATAAGATTTTTTACTTATCTAAATAGATGGGGAGGTTTCCATACTATTCA
GAAGTCTTGGGCTAAGAGGATTTCAGCTCTACTGTAGATGTATGTGGTTT
TTACGAACACATGTCATGAACTAGTTAAGCATCAGCCACATTGGTTATAT
TTTTTTACCAACGAAGAAAACGGTCTAAAGTGGCCACCGTTGATGGCTCT
GTTTCCAAAAGTGGGGTCCTACTGTACACGGGTACAAAGAGTGGGGCAAC
ACATCAGTCAAGCTTATTGTTTGCCTTCTGCCCTGAGGATTGCCTTGATG
TACATAGGTAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_n11.g1 MSMg01no097_n11.g1 CHROMAT_FILE:
MSMg01no097_n11.g1 PHD_FILE: MSMg01no097_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:43 2005
         (238 letters)



>mm_chr14_99092326_99092963
          Length = 638

 Score =  427 bits (221), Expect = e-124
 Identities = 233/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctagctcacatttagatcaagtgaaaacagttttgttgttaaagtatgattcttaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagctcacatttagatcaagtgaaaacagttttgttgttaaagtatgattcttaaaag 260

                                                                       
Query: 61  tacaaacttaagatacggaagttgtgaataactcttcaatttcaaaggacaattagcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 tacaaacttaagatacggaagttgtgaataactcttcaatttcaaaggacaattaacatt 320

                                                                       
Query: 121 atgttccttctgttatttgtctttaacatgatcctacttgcagctcaaaggacgaataaa 180
            ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 321 ttgttccttctgttatttgtctttaacatgttcctacttgcagctcaaaggacaaataaa 380

                                                                    
Query: 181 atccattaagaagagagtttaatattggtgatgtcataagactgtaccccaggcagc 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccattaagaagagagtttaatattggtgatgtcataagactgtaccccaggcagc 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)