BAC Information

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BAC

Clone NameMSMg01-098B16
Chromosome14 (Build37)
Map Location 90,023,171 - 90,023,506
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG328451, LOC100043336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098B16.T7 (MSMg01no098_b16.b1)MSMg01-098B16.TJ (MSMg01no098_b16.g1)
ACCAG314368AG314369
length713727
length of high quality
(start - end)
573 (66 - 638)567 (75 - 641)
definitionCHROMAT_FILE: MSMg01no098_b16.b1 PHD_FILE: MSMg01no098_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:05 2005CHROMAT_FILE: MSMg01no098_b16.g1 PHD_FILE: MSMg01no098_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTATATATCAACATGCTCCAGGTCCATGGATTTAACATTAAAATAG
TCATATTCTATGGAGAAGGTTTATTTACATTTTTTCATTCACTTTCATAA
AGAAAATTAAAAAATAGCCTCTATACAGGGATGTCAATAGCGTATTGTTT
AGTCTACATGAAAATTACTTCATAGAGATTTTCCAGTTTTGGCTTTTGTA
GTAGAACTGAACATTTTTTTAATTTCCTTGGTTTCTGTTGTTATGTCTCC
CCTTTTCATTTCTTGTTTTGTTAATTTGGCTACTCTCTCTGTGCTCTCTG
GTTAGTGTGGCTAAGGGTTTATCTATCTTGTTGATTTTCTCACAGAACCA
GCTCCTGGTTTGGTTGATTCTTTGTACAGTTCTTTTAGTTTCTACTTGGT
TGATTTTAGCCCTGAGTTTGATTGTTTCCTGACATCTACTCACCTTGCAT
GTATTTGCTTCTTTTTGTTCTAGAGCTTTCCAGTGTGCTGTCAAGCTGCT
AGTACATGCTTTCTTTGGCTTCTTTTAGGAGTCTCTCAGAGCTATGAGTT
TTCTTCTTAGGACTGCTTTCATTGTATTCCATAAGTTTGGGTATGCTGTG
CCTTCATTTTCATTAAATTCTAAAGAGTCTTTAATTTCTTTCCTTCTTTC
TTCCTTGATCAAA
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCGCCCTATGTGAGACAGATGTCA
AATACCCGTTCTACCCAAAGCTGGATTATGCCCCAAGATGGCAAAGATTT
AGCAGCTGCCGTATTAGAAGCTGTTTCTCAATTACAGTAGCTAACATGGC
AGAGAAAAGAAGCTGTAATTATGGAAAATCATAATAGGTCTGAAGCTGCT
AGTATCATGAAATATCAATTGTTAGGTGAAGGTCAATTTGATGACTTAAG
ACATAAGATGTAATTTTACAACGTTATTATACAATGTACTTTAGGAGACT
TAAGAGTCTGAGATAAAATGAAGGCACAAAGAAAAAGGACTATGTCATCT
ACCAAGATTATGCAAAGTACCAGAAAAGCTTGTAGTGAATTATTACATAG
ATTAATGTCTACTATAAACAGAGCAATACTAGATACAATTAGGAGACAGA
TGTTAATTGAAGTTTTAGCTTTAGAAAATGCAACTGCAGAGTATAAATAG
TTCCTTAAAAGCTCAGTCAGCACCCATAGGTGCACAGATTAGAGCTGCCA
CTGATACTGACCCTAATTACTATGTAATTGGATAAGCAATAGCCTTCAAT
ATCTAAATGTCTGGTGTTTCATCTGTGGGAGACAAGGTCTTTTTGAAAGG
GATTAGGGGAGGTGGTCTTAAGAGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_b16.b1 MSMg01no098_b16.b1 CHROMAT_FILE:
MSMg01no098_b16.b1 PHD_FILE: MSMg01no098_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:05 2005
         (573 letters)



>mm_chr14_90023171_90024143
          Length = 973

 Score =  650 bits (336), Expect = 0.0
 Identities = 336/336 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgctccaggtccatggatttaacattaaaatagtcatattctatggagaaggtttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 catgctccaggtccatggatttaacattaaaatagtcatattctatggagaaggtttatt 277

                                                                       
Query: 61  tacattttttcattcactttcataaagaaaattaaaaaatagcctctatacagggatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tacattttttcattcactttcataaagaaaattaaaaaatagcctctatacagggatgtc 217

                                                                       
Query: 121 aatagcgtattgtttagtctacatgaaaattacttcatagagattttccagttttggctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 aatagcgtattgtttagtctacatgaaaattacttcatagagattttccagttttggctt 157

                                                                       
Query: 181 ttgtagtagaactgaacatttttttaatttccttggtttctgttgttatgtctccccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ttgtagtagaactgaacatttttttaatttccttggtttctgttgttatgtctccccttt 97

                                                                       
Query: 241 tcatttcttgttttgttaatttggctactctctctgtgctctctggttagtgtggctaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  tcatttcttgttttgttaatttggctactctctctgtgctctctggttagtgtggctaag 37

                                               
Query: 301 ggtttatctatcttgttgattttctcacagaaccag 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  ggtttatctatcttgttgattttctcacagaaccag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)