BAC Information

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BAC

Clone NameMSMg01-098D13
Chromosome14 (Build37)
Map Location 100,001,607 - 100,001,782
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671
Downstream geneLOC668672, EG546623, Klf12, LOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098D13.T7 (MSMg01no098_d13.b1)MSMg01-098D13.TJ (MSMg01no098_d13.g1)
ACCAG314458AG314459
length724702
length of high quality
(start - end)
180 (46 - 225)424 (74 - 497)
definitionCHROMAT_FILE: MSMg01no098_d13.b1 PHD_FILE: MSMg01no098_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:15 2005CHROMAT_FILE: MSMg01no098_d13.g1 PHD_FILE: MSMg01no098_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGCTACCACTTATACTGACCAAGCTGTTTATGAAGGACTTTTTT
TTCCCTAAAGAAAAAAGGAAGATGGAAGGTTGCTACTGTCATTTGCTGTC
TCAGTGTGACTGTTGTGGATTCATTGGCCTATTTTTTTTTTTTTTCATTT
GAGTCCTGTACATCAAGAGAGTAGTAAACTGTGCTGGGTAAGGGGCGGGG
GTGTAAGTAAGAAGAAATGGGGAGTTTCTTTGCGCCCTCTTTTTATCCAT
CTTTCCTTTCTTGCCTTTTTTTTTTATTTATCCCCCCCTCCCTTTCTCGA
GTATATTTCTTTTTGTTTCTCTGCCCTGTGCCATCTCACTTTCTGCTTTC
ATTTCTCTTATCTCCCCTTTCTGCCATTTCTGTTTTTTGCTTCCCCCCCA
TTTCCCTATTTACTCCACTCTTTCTTTTTTTTTCCTTTTCCTCTCTTATT
TCCTCTCATCCTCCCCTTCTTTTTTATTTTCTTGACTTTCAGACTCCCCC
CCTTTTCTTTTTTTCTTTCTTCCCCCCTCCCCCTTTTTCATTTTTTTTCC
TTTAATCTTTCTTTCCTCTTCTTTTCCCGCTCCCCCCTTTTTACTTTCTT
TCCCGCTCTTCTCTTTTTCCTTCTCCTTTTTTTCTTCTTCTCTTTCTCCT
TCCCTTACCTTTCTTTTTTCCCTC
CATTGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTAGATTGTATCTTGGGTATTCTGCA
CTTTTTTTCTGGCTAATTATCACTTATCAGTGAGTACATACCATGTATGT
TCTTTTGGTTCTGAGTTACCTCACTTAGGATGATATTCTCTAGTTCCATC
CATTTGCCTTCAGAACTTAGGATGTCCTTGTTCTTAATAGCTGAGTAGTA
TTCCATTGTGTAAATGAACCACATTTTATATATTCATTCTTCTGTCGTGG
GACATCTGGGTTGTTTCCAGCTTCTGGCTATCACAAACAAGGCTGCTATG
AACAGAAAATGAGGAAGAGCCTTGAACTGATTGGCACAGGGGAAAATTTT
CTAAACAGAACCACAATGGCTCACACTCTAATATCAAGAATTGATAAATG
GGACCTCATGAAACTGAAAAGTTTCTATAAGGCAAAAGACATAGTCTATA
AGACAAACCAGCAACCTATAAATTGGGAAAAAAAATCTTTAGTAACCCCT
CATGAGATAGAGGGCTAATATCCAAAATATATAAAGAAGTGAGAAGCTAA
CCTCCAAAAACCAAACAACTCAATCAAAAAATGGGGTAGAGAATTCACAA
CAGAGGAATCTCAAATGGCCGAAAAACACCTAAAGAAATGTTTAACGTCC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_d13.b1 MSMg01no098_d13.b1 CHROMAT_FILE:
MSMg01no098_d13.b1 PHD_FILE: MSMg01no098_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:15 2005
         (180 letters)



>mm_chr14_100001403_100001982
          Length = 580

 Score =  333 bits (172), Expect = 5e-96
 Identities = 175/176 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgctaccacttatactgaccaagctgtttatgaaggacttttttttccctaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgctaccacttatactgaccaagctgtttatgaaggacttttttttccctaaa 264

                                                                       
Query: 65  gaaaaaaggaagatggaaggttgctactgtcatttgctgtctcagtgtgactgttgtgga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaaaaaggaagatggaaggttgctactgtcatttgctgtctcagtgtgactgttgtgga 324

                                                                   
Query: 125 ttcattggcctattttttttttttttcatttgagtcctgtacatcaagagagtagt 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 ttcattggcctattttttttttttttcatttgagtcctgtagatcaagagagtagt 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)