BAC Information

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BAC

Clone NameMSMg01-098E08
Chromosome14 (Build37)
Map Location 88,340,874 - 88,341,460
singlet/doubletsinglet
Overlap genenone
Upstream geneDiap3, EG665324, Tdrd3
Downstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098E08.T7 (MSMg01no098_e08.b1)MSMg01-098E08.TJ (MSMg01no098_e08.g1)
ACCAG314496AG314497
length710713
length of high quality
(start - end)
665 (44 - 708)587 (75 - 661)
definitionCHROMAT_FILE: MSMg01no098_e08.b1 PHD_FILE: MSMg01no098_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:19 2005CHROMAT_FILE: MSMg01no098_e08.g1 PHD_FILE: MSMg01no098_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCTCTGCAAGAACAGACTGGGAAGAAGAAGCAGCTCATTATGAGAA
AAAAGGGTACCAGCCAGGTAAAGTGCTAGCTAATCAGTTAAGGAAGCCAA
AAGCGGCTGGCGAAGGCCAGTTTGCTGATTGGCCTCAGGGCAGTCGGCTT
CAAGGTCCGGCCTATGCGGAGTCCCCGCCCTGCGTAGTGCGTCAGCCCTG
CGCAGAGAGACAATGCGCAGAGAGGCAATGCGCAGACTCATTCATTCCCA
GAGAGGAACAAAGGAAAATACAACAGGCATTTCCAGTCTTTGAAGGAGCC
GAGGGTGGGCGTGTCCACGCTCCGGTAGAATACGTACAGATTAAAGAACT
TGCCGAGTCGGTCCGTAAATACGGAACCAATGCTAATTTTACCTTGGTGC
AGTTAGACAGGCTCGCCGGCATGGCACTAACTCCTGCCGACTGGCAAACG
GTTGTAAAAGCCGCTCTCCCTAGTATGGGCAAATATATGGAATGGAGAGC
TCTTTGGCATGAAGCTGCACAAGCGCAGGCCCGAGCAAACGCAGCTGCTT
TGACTCCAGAGCAGAGAGATTGGACTTTTGACTTGTTAACGGGTCAGGGA
GCTTATTCTGCTGATCAGACAAACTACCATTGGGGAGCTTATGCCCAGAT
TTCTTCCACG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAAGATTGCATGGCTGGTGTTGTGG
GTATCTGGTGGTAGTCAGCGGACTCTGCGCCCTAGCTACCCTTGTGCTGC
TTGGACCGGAAGAGGCTTGTGCCCCTACTCTGACCAGGGTTTCTGCTTCC
CTGACTAATGCAGTCTCAAGTCCTGCGCATTGGAGCAGATGCTGTGTTCC
ACTCACCAGAAGTCTTAAGATCGCTTGGCGGGTGTTGTGGGTAGCTGGCG
GTAGTCAGATGACTGTGTACCCTAGCTACCCCAGTGCTGCTCGCAACAGT
CTCTTTTAGATAGACCTCAATATTTCTTGGGCTTCCAATGAGCACCTGTT
AGTCAATATATGTAAATTTTATATAAACCTTATTATTTGATATGAAAAAC
TGTGAGGTGGGCAATTTACTTTTGTTCATTAATATAAAGTTTTAAATAAC
CAAATTTAATTCTTTTGTTTTCAAATTCTCATGTAAGTGTTGTTACTGCA
CAGACTACAAAGGTGTCCTTAGCAAAATATTAGCCTATTATAGTGAGGAT
AGGCATAGGAAGGAGTTCAAATATATTTTAAATTATTTATTATTTTATTG
ATAGACACCATATTTTAATGTTTTTATTAAGACTCCAGTTAGTATGCAGG
AATGTGTATATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_e08.g1 MSMg01no098_e08.g1 CHROMAT_FILE:
MSMg01no098_e08.g1 PHD_FILE: MSMg01no098_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:19 2005
         (587 letters)



>mm_chr14_88340674_88341660
          Length = 987

 Score = 1135 bits (587), Expect = 0.0
 Identities = 587/587 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaagattgcatggctggtgttgtgggtatctggtggtagtcagcggactctgcgcccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaagattgcatggctggtgttgtgggtatctggtggtagtcagcggactctgcgcccta 260

                                                                       
Query: 61  gctacccttgtgctgcttggaccggaagaggcttgtgcccctactctgaccagggtttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctacccttgtgctgcttggaccggaagaggcttgtgcccctactctgaccagggtttct 320

                                                                       
Query: 121 gcttccctgactaatgcagtctcaagtcctgcgcattggagcagatgctgtgttccactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttccctgactaatgcagtctcaagtcctgcgcattggagcagatgctgtgttccactc 380

                                                                       
Query: 181 accagaagtcttaagatcgcttggcgggtgttgtgggtagctggcggtagtcagatgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accagaagtcttaagatcgcttggcgggtgttgtgggtagctggcggtagtcagatgact 440

                                                                       
Query: 241 gtgtaccctagctaccccagtgctgctcgcaacagtctcttttagatagacctcaatatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtaccctagctaccccagtgctgctcgcaacagtctcttttagatagacctcaatatt 500

                                                                       
Query: 301 tcttgggcttccaatgagcacctgttagtcaatatatgtaaattttatataaaccttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttgggcttccaatgagcacctgttagtcaatatatgtaaattttatataaaccttatt 560

                                                                       
Query: 361 atttgatatgaaaaactgtgaggtgggcaatttacttttgttcattaatataaagtttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttgatatgaaaaactgtgaggtgggcaatttacttttgttcattaatataaagtttta 620

                                                                       
Query: 421 aataaccaaatttaattcttttgttttcaaattctcatgtaagtgttgttactgcacaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aataaccaaatttaattcttttgttttcaaattctcatgtaagtgttgttactgcacaga 680

                                                                       
Query: 481 ctacaaaggtgtccttagcaaaatattagcctattatagtgaggataggcataggaagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctacaaaggtgtccttagcaaaatattagcctattatagtgaggataggcataggaagga 740

                                                          
Query: 541 gttcaaatatattttaaattatttattattttattgatagacaccat 587
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttcaaatatattttaaattatttattattttattgatagacaccat 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)