BAC Information

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BAC

Clone NameMSMg01-098F04
Chromosome14 (Build37)
Map Location 95,232,824 - 95,233,280
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC100043356, LOC100043783
Downstream geneLOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098F04.T7 (MSMg01no098_f04.b1)MSMg01-098F04.TJ (MSMg01no098_f04.g1)
ACCAG314534AG314535
length687700
length of high quality
(start - end)
627 (36 - 662)465 (76 - 540)
definitionCHROMAT_FILE: MSMg01no098_f04.b1 PHD_FILE: MSMg01no098_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:23 2005CHROMAT_FILE: MSMg01no098_f04.g1 PHD_FILE: MSMg01no098_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TCACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGGTAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT
TGACGGTGTCTTTTGCCTTGCAGAAACTTTAGAGTTTCATTAGGTCCCAT
TTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTATTCTGTTCAGGAA
TTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTA
TAAGGTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGAT
TTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACA
CGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCT
TCCACTGGATGGTTTTAGATCCCTTGTCGAAGATCAAGTGACCATAGGTG
TGTGGGTTCATTTCTGGATCTTCAATTCTATTCCATTGGTCTACTTGTCT
GTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAA
GCTTTAGGTCTGGCATGGCGATTCCGCCAGAAGTTCT
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTCTTGTGATTGATCCAAAGTTT
AACACTTCTCATGCAATTCATTTTTTGTAAGATTTTTTCCATGAATCATT
TGAGTTAGCTTTATTCTTAATTCGTATATGTGTGTAGTGCTTAGAATTGA
ATCTCAATCAGTATCTTATTAACAGATACATTTAATCCAAAAGAGAGAAA
ATACATAAAAATTTTATAAAATCTTTACAAATGTTTAGAAGTTCATATAA
CTGTAGAAATAAATAATGATATGGACATATAGTGAGATGTACAAATATAT
AAATGCTTAGGCTGGCAGATGATAAACAGTTGATAAATTGATAGATAAAT
AGACAAATAGATAGGAAGATAGACAATAGATAGATAGATGATAGATAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGTCAAATTGACTACTGATTCCAAGATTACTATTGTAAACACTTTTCA
TTAAATTGATTTTTACAAAACACTAGTATATTTTTCTGAGTAAATTATTA
CGACTTGATAAACGCATTATTTCTAGAGCCTTTTAAGTTAGATTCATCCA
AGACAACAATTTCTAGCAGTTAGTCATACCTCTACCACAGAACGTTTGTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_f04.g1 MSMg01no098_f04.g1 CHROMAT_FILE:
MSMg01no098_f04.g1 PHD_FILE: MSMg01no098_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:24 2005
         (465 letters)



>mm_chr14_95232624_95233488
          Length = 865

 Score =  864 bits (447), Expect = 0.0
 Identities = 457/465 (98%), Gaps = 8/465 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcttgtgattgatccaaagtttaacacttctcatgcaattcattttttgtaagattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcttgtgattgatccaaagtttaacacttctcatgcaattcattttttgtaagattt 260

                                                                       
Query: 61  tttccatgaatcatttgagttagctttattcttaattcgtatatgtgtgtagtgcttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccatgaatcatttgagttagctttattcttaattcgtatatgtgtgtagtgcttaga 320

                                                                       
Query: 121 attgaatctcaatcagtatcttattaacagatacatttaatccaaaagagagaaaataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgaatctcaatcagtatcttattaacagatacatttaatccaaaagagagaaaataca 380

                                                                       
Query: 181 taaaaattttataaaatctttacaaatgtttagaagttcatataactgtagaaataaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaaattttataaaatctttacaaatgtttagaagttcatataactgtagaaataaata 440

                                                                       
Query: 241 atgatatggacatatagtgagatgtacaaatatataaatgcttaggctggcagatgataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgatatggacatatagtgagatgtacaaatatataaatgcttaggctggcagatgataa 500

                                                                       
Query: 301 acagttgataaattgatagataaatagacaaatagataggaagatagacaatagatagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagttgataaattgatagataaatagacaaatagataggaagatagacaatagatagat 560

                                                                       
Query: 361 agatgatagatagatagatagatagatagatagatagatagatagatagatagatagata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatgatagatagatagatagatagatagatagatagatagatagatagatagatagata 620

                                                        
Query: 421 gatagatagtcaaattgactactgattccaagattactattgtaa 465
           |        ||||||||||||||||||||||||||||||||||||
Sbjct: 621 g--------tcaaattgactactgattccaagattactattgtaa 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)