Query= MSMg01no098_i01.b1 MSMg01no098_i01.b1 CHROMAT_FILE:
MSMg01no098_i01.b1 PHD_FILE: MSMg01no098_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:38 2005
(426 letters)
>mm_chr14_10961716_10962541
Length = 826
Score = 714 bits (369), Expect = 0.0
Identities = 408/421 (96%), Gaps = 5/421 (1%)
Strand = Plus / Plus
Query: 10 gaattcttatacaccccggcctgc-cgtactactctgctgactc-taatcatgttgctga 67
|||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 207 gaattcttatacaccctggcctgcacgtactactctgctgactcataatcatgttgctga 266
Query: 68 tgtttgaatgggccaatcgtgtgtaaccgcgtcaattcttcctagcccct-aaccactac 126
|||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||
Sbjct: 267 tgtttgaatgggccaatcgtgtgtaaccgcaccaattcttcctagcccctaaacc-ctac 325
Query: 127 cctataaaaaccc-cagtttttgagtctcggggtcgaatccactgtctcctgtgtgagat 185
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 326 cctataaaaaccctgagtttttgagtctcagggtcgaatccactgtctcctgtgtgatat 385
Query: 186 acgttttgacccggagctctgccattaaactacctcgtgttgttacatcaaggtgttgtg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acgttttgacccggagctctgccattaaactacctcgtgttgttacatcaaggtgttgtg 445
Query: 246 ctctgttcatgattcttgggtgcacaccgaattgggagtttagtgggggggttccccact 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctctgttcatgattcttgggtgcacaccgaattgggagtttagtgggggggttccccact 505
Query: 306 aggttctttcaagttctcctgaggaggggccaactgaggacagtccacagcacttttgtc 365
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 506 aggttctttcaagttctcctgaggaggggccgactgaggacagtccacagcacttttgtc 565
Query: 366 gtttcttctatatagcacacacacttctttgccttcctgtttctgccgactgatgtctgg 425
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtttcttctatatggcacacacacttctttgccttcctgtttctgccgactgatgtctgg 625
Query: 426 c 426
|
Sbjct: 626 c 626
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_i01.g1 MSMg01no098_i01.g1 CHROMAT_FILE:
MSMg01no098_i01.g1 PHD_FILE: MSMg01no098_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:38 2005
(475 letters)
>mm_chr14_11123124_11123999
Length = 876
Score = 804 bits (416), Expect = 0.0
Identities = 458/472 (97%), Gaps = 2/472 (0%)
Strand = Plus / Minus
Query: 1 actaagggaaagagaaatgctgttatatgtgtgcttgtgcttacttacacacaactattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 actaagggaaagagaaatgctgttatatgtgtgcttgtgcttacttacacacaactattt 577
Query: 61 atgtttctgtatgtatgttgcccttgaccc-tttttcttgactcagaagtttcagaagtc 119
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 576 gtgtttctgtatgtatgctgcccttgacccttttttcttgactcagaagtttcagaagtc 517
Query: 120 ttcttagattcagtccacatacatttgaagggctttttaaaaggtggagtcacttgccta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttcttagattcagtccacatacatttgaagggctttttaaaaggtggagtcacttgccta 457
Query: 180 tcttcacatgtacactggtgtgtaggaggcaacccctgcagctgcagaaacagtgacaat 239
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 456 tcttcacatgtacactggtgtgtaggaggcagcccctgcagcagcagaaacagtgacaat 397
Query: 240 ctctcagtatctcatattattaggcttcctcaacataaatgtctttaaagccaataatta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctctcagtatctcatattattaggcttcctcaacataaatgtctttaaagccaataatta 337
Query: 300 aaatgtaaaggggtaagtagttaaataaaataggaggagatttatgtcagtcatgtgatt 359
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 336 aaatgtaaaggggtaagtagttaaataaaataggaggagatttgtgtcagtcatgtgatt 277
Query: 360 tttaataataatcacttattttactagtaacaagattgcttgggtatatgcaaatatata 419
||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 276 cttaataatagtctcttattttactagtaacaagattgcttgggtatatgcaaatgtata 217
Query: 420 gatgtagataccttaaacagaaaaggaaggaaggaagaaaggaaggaaggga 471
|||||||||||||||| ||| |||||||||||||||| ||||||||| ||||
Sbjct: 216 gatgtagataccttaagcagcaaaggaaggaaggaaggaaggaagga-ggga 166
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space: 402690
Effective search space used: 402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
