BAC Information

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BAC

Clone NameMSMg01-098J18
Chromosome14 (Build37)
Map Location 95,486,264 - 95,486,756
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043356, LOC100043783
Downstream geneLOC677613, LOC100043784, LOC382931, 4921530L21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098J18.T7 (MSMg01no098_j18.b1)MSMg01-098J18.TJ (MSMg01no098_j18.g1)
ACCAG314745AG314746
length697684
length of high quality
(start - end)
297 (41 - 337)493 (56 - 548)
definitionCHROMAT_FILE: MSMg01no098_j18.b1 PHD_FILE: MSMg01no098_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:46 2005CHROMAT_FILE: MSMg01no098_j18.g1 PHD_FILE: MSMg01no098_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTATCCAGAGAGGATCCGCGGAATTCCATCATCTGAATTCACTATATA
AACAAACTCAAAGGAAAAATAAAACACATGATCATCTCATTAGATGCTGA
GAAAGTCAAAATTCAATACCCCTTCATGGGAAAATTTTGGGAAGATCAGG
AATTCAAGGGCCATACCAAAACATAGTAAAAGCAATATACAGCAAATCAA
TAGCCTACATCAAACTAACTGGAGAGAACCTTGAAGCAATCCCACTAAAA
TCAAGGAATAGGCTGCCTGCTCTCTTCCTATCTATTCAATGTAGCACTCG
ATGTTCTCATCAGAGAAATTAGACAACAAAAGGAGGTCAACGCCGATCTT
TTTTCGAGAGGAATATCTAAAATTACTGCCTCTTGCTGAGAATGAAGATA
ATAAGCATCCAAAACCGCCCAGATACTCTTACTTGACGAATATCCTCAAT
TGCCGAAGAATTATCTCCAAACCATGGCGGCTTTTTAACTAATATACAAA
CAATTCCCCCCCTCCTCCTTATTTATTTTTCTTTATTACCCTACTTCACC
TTTTTTTTTTCTTTCACCATACTTCATTTCTTCCTTCTTTTATTACCACA
CTCCCCGGTATATTCTTCGGTACCGCCATGACAAATTTTGCAAACCTTCC
TCTTAATTACTTCCTTTCCCCCTCCCCTTCCCTCTTTTTTTCCTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAAGGAGGAAAGTTTCCAATCAGAGACTAGATGCTCTTGGGGTCC
TGTAAAGCCCCTCCAGACCAGTAAACCAGGCCACATCTAGACAATGGGGC
TCCAGGAATCAGGAGTGCCACTCACTTTTTTCCCAGCTATGGTGGCAGCT
ACTACATCCAAATAGGATTGGTAGTAGAGCAGGGTTCCAAGATGTCTTGG
TATGCAGTCTTGGTAGTTTTGAAACTAGGAATGTAGACTAGGCTGGCACT
GAATTTCTGGTTTAACTTCTTTTCTGTTGTATTTTCAGCTGCAGAACACA
TTGCTAGCCATTGGATTTTGTAGTTTTCTTCTAAAATAAGAATATTTTAC
TAAGACTTTAAAATTAATTTATTAATGAATTATTCATATATTATTCTAGA
ATTATAAAAGTTTTATGTGAATAAGATACAACTGAAGGTATGGCCTAGCC
CAAAAGCTCTTGCCTGTATGAGGGATATGTTCTTCTAGCTGGGGTGCCTT
GTCTGGTCATCAGGAGAGGAAAGCACATAGCCTTGCAGAGACTTGAAGTG
CCAAAGGGATAGTATTTGAAAAGGTAATAACGAAAATAACTAATATAAAA
ATAGAAAAAAGAATAGAATATGGAGGCCCGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_j18.g1 MSMg01no098_j18.g1 CHROMAT_FILE:
MSMg01no098_j18.g1 PHD_FILE: MSMg01no098_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:47 2005
         (493 letters)



>mm_chr14_95486064_95486956
          Length = 893

 Score =  953 bits (493), Expect = 0.0
 Identities = 493/493 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggaggaaagtttccaatcagagactagatgctcttggggtcctgtaaagcccctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaggaggaaagtttccaatcagagactagatgctcttggggtcctgtaaagcccctcca 260

                                                                       
Query: 61  gaccagtaaaccaggccacatctagacaatggggctccaggaatcaggagtgccactcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaccagtaaaccaggccacatctagacaatggggctccaggaatcaggagtgccactcac 320

                                                                       
Query: 121 ttttttcccagctatggtggcagctactacatccaaataggattggtagtagagcagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttcccagctatggtggcagctactacatccaaataggattggtagtagagcagggt 380

                                                                       
Query: 181 tccaagatgtcttggtatgcagtcttggtagttttgaaactaggaatgtagactaggctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaagatgtcttggtatgcagtcttggtagttttgaaactaggaatgtagactaggctg 440

                                                                       
Query: 241 gcactgaatttctggtttaacttcttttctgttgtattttcagctgcagaacacattgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcactgaatttctggtttaacttcttttctgttgtattttcagctgcagaacacattgct 500

                                                                       
Query: 301 agccattggattttgtagttttcttctaaaataagaatattttactaagactttaaaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agccattggattttgtagttttcttctaaaataagaatattttactaagactttaaaatt 560

                                                                       
Query: 361 aatttattaatgaattattcatatattattctagaattataaaagttttatgtgaataag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatttattaatgaattattcatatattattctagaattataaaagttttatgtgaataag 620

                                                                       
Query: 421 atacaactgaaggtatggcctagcccaaaagctcttgcctgtatgagggatatgttcttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atacaactgaaggtatggcctagcccaaaagctcttgcctgtatgagggatatgttcttc 680

                        
Query: 481 tagctggggtgcc 493
           |||||||||||||
Sbjct: 681 tagctggggtgcc 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)