BAC Information

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BAC

Clone NameMSMg01-099F12
Chromosome14 (Build37)
Map Location 31,026,413 - 31,026,793
singlet/doubletsinglet
Overlap geneCacna1d
Upstream geneCacna2d3, Ppia-ps15, EG665431, Selk, Actr8, Il17rb, Chdh
Downstream geneLOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099F12.T7 (MSMg01no099_f12.b1)MSMg01-099F12.TJ (MSMg01no099_f12.g1)
ACCAG315302AG315303
length723775
length of high quality
(start - end)
381 (70 - 450)96 (110 - 205)
definitionCHROMAT_FILE: MSMg01no099_f12.b1 PHD_FILE: MSMg01no099_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:46 2005CHROMAT_FILE: MSMg01no099_f12.g1 PHD_FILE: MSMg01no099_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGAGGCGCGGAA
TTCCCCCACTGTCCCCACGGCTTCCAGGATGGCAATAGTCTGGAACTAGT
GCTTGTGATTACAAGCCTTCAGTCTAGAGCCCTTCCCCTCTGCAGTCCGA
CTTCTGTCTCCTTGGGAGACATGGGAACTCTGCTCTCCATCTCATCCACT
CCCCTCTCCACACAAGCTAGAGAGGCCAGAGGTCTGGGATGGCCTCAGGT
GCCGCCCAGGATGCACAGGGTCTTCTTTCTCCAGCCTGGCCTGTCTCCTT
ACCTAGAGACAGGGGTCTCAGTGTGTATGCTTGGCTGGCCTGGAACTCCT
TAAGCAGGGTCTGGAAGGCAAAGCTCATCCTGCCTCTTCGTGAATGTGGG
AGATATGACCGACCACACTCAGCCTCGGACTGTCCTGATATTTCCTATGC
GTCCTAAGGCCCCCTGCTCTATTTTATTTCCACTTTCAAAAATTGTTGGA
TACAAACCACTACCTTATTTTCCGATGTATTCAATTGAAACAAGCCTCCT
CCTGTGTTACAGTAAAATGCACAAGGCCAGCCCTGATGCTATATTGACCC
TGGTACCAGATCTTTGTCCCCTGTCTTCTCGATTCTTTTTGCGAACATTT
CTTCATGGAAATTTTGCTTTCCCCCTCGTGTGGGAATAAAATTTTGTTTC
ACCCAACACAGTACCTCTATTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCATTCAGTGAATGTGGAAGTTGGGCGCTGGTGGGAGGTGG
TGGAAAAGGCCCTGTCAGAGCACAGGTAAAGGTGAGGCTGTGTCTCAGGA
GCCATGCAAGGAGCCATATTATCATTTCAACCTGGTGCCCCCAGCCTGAT
GAAAAAAGTGAGCCACGGGTCAGGAAGGATTGGGGTAGGTAATTTTGTCC
TCCAGTACTGGTTGCAATGTGTCTTATGTTTAAAAAAGATTTATTTATTT
ATATATTATATTTGAGCGTTTTGTGATCATATATGTGTGCTCTGTGCATG
CAATGCCCATTGACACCAGAAGAGGGCATCAGATCTCCCCGGAACTGGAG
TTACCTGACAGTTGTTATTATCATGTTCCCCGTGCTTGCCTACTTACCCG
AACCCAGTTCTTTCTTGTAGTACTGGCACACTTTCTTCTTTCCTTGAACC
ACACTCTTCTTCCCCTGTTCCACGCCTTATTTCTATCTTTTAGTACCCCC
CCCCCGCACTTAACTACCTTCGCTTTCTACTTCCTCCCTCTCTCTTTATC
CTTACTTTTTTCTTTCATCCATTCGCCCCCCTCTATCTTTATTCTACTTC
TCCTTCCCTCTTGTCTTTTCTCCACCCCTCTCTCTTTCCTCCCTCTCTCT
TCACCTCCCGCTTATCCTCATCCTCTCTCTCCCTCCCGCCTTAAATCTCC
GTCCCTTCTCTCCATCCTCCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_f12.b1 MSMg01no099_f12.b1 CHROMAT_FILE:
MSMg01no099_f12.b1 PHD_FILE: MSMg01no099_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:46 2005
         (381 letters)



>mm_chr14_31026358_31027138
          Length = 781

 Score =  661 bits (342), Expect = 0.0
 Identities = 372/382 (97%), Gaps = 2/382 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcttccaggatggcaatagtctggaactagtgcttgtgattacaagccttcagtctagag 60
           |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 436 gctttcaggatggcaatagtctggaactagtgcttgtgattacaagcctccagtctggag 377

                                                                       
Query: 61  cccttcccctctgcagtcc-gacttctgtctccttgggagacatgggaactctgctctcc 119
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cccttcccctctgcag-cctgacttctgtctccttgggagacatgggaactctgctctcc 318

                                                                       
Query: 120 atctcatccactcccctctccacacaagctagagaggccagaggtctgggatggcctcag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atctcatccactcccctctccacacaagctagagaggccagaggtctgggatggcctcag 258

                                                                       
Query: 180 gtgccgcccaggatgcacagggtcttctttctccagcctggcctgtctccttacctagag 239
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtgccacccaggatgcacagggtcttctttctccagcctggcctgtctccttacctagag 198

                                                                       
Query: 240 acaggggtctcagtgtgtatgcttggctggcctggaactccttaagcagggtctggaagg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 acaggggtctcagtgtgtatgcttggctggcctggaactccttaagcagggtctggaagg 138

                                                                       
Query: 300 caaagctcatcctgcctcttcgtgaatgtgggagatatgaccgaccacactcagcctcgg 359
           || ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 137 cagagctcatcctgcctctttgtgaatgtgggagatatgcccgaccacactcagcctcgg 78

                                 
Query: 360 actgtcctgatatttcctatgc 381
            |||||||||||||||||||||
Sbjct: 77  tctgtcctgatatttcctatgc 56


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)