Query= MSMg01no100_a19.b1 MSMg01no100_a19.b1 CHROMAT_FILE:
MSMg01no100_a19.b1 PHD_FILE: MSMg01no100_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:48 2005
(412 letters)
>mm_chr14_123410347_123411158
Length = 812
Score = 766 bits (396), Expect = 0.0
Identities = 409/414 (98%), Gaps = 2/414 (0%)
Strand = Plus / Plus
Query: 1 gcaaccagccaggaagccagcaaactgactacagagaaacagcccaggaaggcagcctac 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 gcaaccagccaggaagccagcaaactgactacagagaaatagcccaggaaggcagcctac 260
Query: 61 tctacagcagggaacccagaaggatatcgctatctataatagccagccgaggaagctacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctacagcagggaacccagaaggatatcgctatctataatagccagccgaggaagctacc 320
Query: 121 tcctgtttaaagcttgagacagagtctcttactcaaactcagcaactggatagagtggct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tcctgtttaaagcttgagacagagtctcttactcaaactcagcaactggataaagtggct 380
Query: 181 ggggagcaagctccagggattctccaatcttaactccctggtgctagctgatactgattt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggagcaagctccagggattctccaatcttaactccctggtgctagctgatactgattt 440
Query: 241 tcacattacagaactccagtcagttagttcatgctttaccaccctcagcccatgaaatag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacattacagaactccagtcagttagttcatgctttaccaccctcagcccatgaaatag 500
Query: 301 cccttctgtaggccaaaataaaatcttttatttaagttgtttttgtcactaatataaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccttctgtaggccaaaataaaatcttttatttaagttgtttttgtcactaatataaaaa 560
Query: 361 g--actgctacagcaccctatctacagcttcatggaaccatctagaaactgaca 412
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaactgctacagcaccctatctacagcttcatggaaccatctagaaactgaca 614
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_a19.g1 MSMg01no100_a19.g1 CHROMAT_FILE:
MSMg01no100_a19.g1 PHD_FILE: MSMg01no100_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:48 2005
(427 letters)
>mm_chr14_123547371_123548198
Length = 828
Score = 812 bits (420), Expect = 0.0
Identities = 426/428 (99%), Gaps = 1/428 (0%)
Strand = Plus / Minus
Query: 1 ctaattttaaggagctctgagatctctgaggaccc-cattttctttgttgctgtgaatgt 59
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 628 ctaattctaaggagctctgagatctctgaggacccacattttctttgttgctgtgaatgt 569
Query: 60 gggaattattaaaatactattggccactgttgcactcatgtaagccttcattataaggac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gggaattattaaaatactattggccactgttgcactcatgtaagccttcattataaggac 509
Query: 120 ttcatccggttatatttttcctgtaaatatcctaagatgctggaatatagagagaactga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttcatccggttatatttttcctgtaaatatcctaagatgctggaatatagagagaactga 449
Query: 180 ctcctaactgacagctgcaatggctttaccagtggtctggctgcctttagggaaggatta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctcctaactgacagctgcaatggctttaccagtggtctggctgcctttagggaaggatta 389
Query: 240 cccaccaagtagccagatggactatccttctgatgagtgtcaagttgttttgagatatcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cccaccaagtagccagatggactatccttctgatgagtgtcaagttgttttgagatatcc 329
Query: 300 atatattccttgaggaagctacatgacaattacagctgcttgcttccttcacataatacc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atatattccttgaggaagctacatgacaattacagctgcttgcttccttcacataatacc 269
Query: 360 agctcctgaaggtacagccctactgcagctatattaaacagatctttccatgcaactaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agctcctgaaggtacagccctactgcagctatattaaacagatctttccatgcaactaat 209
Query: 420 tccatcca 427
||||||||
Sbjct: 208 tccatcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 828
Length adjustment: 9
Effective length of query: 418
Effective length of database: 819
Effective search space: 342342
Effective search space used: 342342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
