BAC Information

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BAC

Clone NameMSMg01-100D10
Chromosome14 (Build37)
Map Location 96,190,827 - 96,191,282
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
Downstream gene4921530L21Rik, Klhl1, LOC100043366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100D10.T7 (MSMg01no100_d10.b1)MSMg01-100D10.TJ (MSMg01no100_d10.g1)
ACCAG315969AG315970
length678684
length of high quality
(start - end)
459 (49 - 507)238 (55 - 292)
definitionCHROMAT_FILE: MSMg01no100_d10.b1 PHD_FILE: MSMg01no100_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:00 2005CHROMAT_FILE: MSMg01no100_d10.g1 PHD_FILE: MSMg01no100_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACTCTCTATCGGGAGAGGATCCGCGGAATTCATCTTACAGCTATACAAA
TGCATAAACACATTCATAATCAGTAGCTGAACTTGGATCTTGGAATACTG
AAGACCTTCACCAATGATTCTTAATTATATTTCTCCTGTTTTCAAAGAGT
TTTCTACAGTTGTCAATGAAAGAGCATGGAGGGAATAACACAATTGTTTC
AAAGAAGGGAATTAAAAAAAAACATGTATACAAGGCATCATATTTGTATT
TATAATCTATAAGAAGTAATTTTTTGTGGCAGAAGTTAGGACCCAAAATA
TATGAACTAAAAAATCTATTGGCAGAATTTTTCCATCAAGGAACAAGATC
AAAAGGGATAAAGAGAAACAACATCCAGCTTAATTTTATCATTGACTCAA
GAGGAGAGTGTCTACTTTTCACTGTCATATCTGTAATATCCTTATTCTGG
GCAAATTGACATGGACTCTCACTCATTTATTTACTTATATTTTTATCTAC
TGCTGTGCTTCTGGAGTTCCATAGGCAAACTGAATGGTGATTTTTCAACG
TTGGCTTACAATCCTCCTCATTTCCTTTTGAGTCTCAGAATTAGGTCTTA
CGCGTTCCTTCATTTCTTGCAACTGACACAATATTCTCCAAAGCGGTTTG
CCCAAGCAAAATTGCTTCTTCTCGATGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATTC
CACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAG
ATGCTGGTGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTATACAACCACTCTGGAAATCAGTCTGGTGGTTCTTCAGA
AAATTGGACATAGTACTACTGGAGGATCCTGCAATACCTCTCCTGGGCTA
TATCCAGAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTGTGTT
CATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACAATGGAATA
CTACTCAGCTATTAAAAAATGAATTTATGAAATTCCTAGGCAAATGGATG
GACTTGGAGGGTATCATCCTGAGTGAGGTAACCCAATAACAAAGGAACTC
ACTGATAAGTGGATATTAGCCCAGATACTTATGATACCCCCGATATAACA
TACAACTTGCCAAACGCATGTATTTTCCAGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_d10.b1 MSMg01no100_d10.b1 CHROMAT_FILE:
MSMg01no100_d10.b1 PHD_FILE: MSMg01no100_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:00 2005
         (459 letters)



>mm_chr14_96190627_96191482
          Length = 856

 Score =  849 bits (439), Expect = 0.0
 Identities = 453/459 (98%), Gaps = 3/459 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgcataaacacattcataatcagtagctgaacttggatcttggaatactgaagacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgcataaacacattcataatcagtagctgaacttggatcttggaatactgaagacctt 260

                                                                       
Query: 61  caccaatgattcttaattatatttctcctgttttcaaagagttttctacagttgtcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccaatgattcttaattatatttctcctgttttcaaagagttttctacagttgtcaatg 320

                                                                       
Query: 121 aaagagcatggagggaataacacaattgtttcaaagaagggaattaaaaaaaaacatgta 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||   |||||
Sbjct: 321 aaagagcatggagggaaaaacacaattgtttcaaagaagggaattaaaaaaa---atgta 377

                                                                       
Query: 181 tacaaggcatcatatttgtatttataatctataagaagtaattttttgtggcagaagtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tacaaggcatcatatttgtatttataatctataagaagtaattttttgtggcagaagtta 437

                                                                       
Query: 241 ggacccaaaatatatgaactaaaaaatctattggcagaatttttccatcaaggaacaaga 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 438 ggacccaaaatatatgaactaaaaaatctattggtagaatttttccatcaaggaacaaga 497

                                                                       
Query: 301 tcaaaagggataaagagaaacaacatccagcttaattttatcattgactcaagaggagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tcaaaagggataaagagaaacaacatccagcttaattttatcattgactcaagaggagag 557

                                                                       
Query: 361 tgtctacttttcactgtcatatctgtaatatccttattctgggcaaattgacatggactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgtctacttttcactgtcatatctgtaatatccttattctgggcaaattgacatggactc 617

                                                  
Query: 421 tcactcatttatttacttatatttttatctactgctgtg 459
           || ||||||||||||||||||||||||||||||||||||
Sbjct: 618 tctctcatttatttacttatatttttatctactgctgtg 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 856
Length adjustment: 10
Effective length of query: 449
Effective length of database: 846
Effective search space:   379854
Effective search space used:   379854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)