BAC Information

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BAC

Clone NameMSMg01-100D16
Chromosome14 (Build37)
Map Location 89,664,065 - 89,664,398
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100D16.T7 (MSMg01no100_d16.b1)MSMg01-100D16.TJ (MSMg01no100_d16.g1)
ACCAG315981AG315982
length690684
length of high quality
(start - end)
334 (61 - 394)244 (52 - 295)
definitionCHROMAT_FILE: MSMg01no100_d16.b1 PHD_FILE: MSMg01no100_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:02 2005CHROMAT_FILE: MSMg01no100_d16.g1 PHD_FILE: MSMg01no100_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATCGGGAGAGGATCCGCGGAATTCTCTTAT
CCGAGGGGAAATTCCTTGAAGAAATAAATAAAATAATTTGCTTTGTTATA
TAGATTACACCACACCTACTGCAGATCATTGCTATGAGTCTTCTGCAGTG
TAAATCACTATAACATTTTAGGTTGTTAAAGTGGGCTTAACAATAAAAAA
TATTAAAATGAGAAATAGTGGGAAAGTAAGTAGAGAAGGGAGTAAATTCG
TTGTCAATACTTATTTAATATTTCAATAATATTTTCTGACTTGGTATTTA
ATATTAATGTTATATAGTAATTCTGTTATACAATGATCCAAACTACTAGA
GGAAGCATCTACACTTTGGTCTTCCTTCTTTTTAAGCTGCATATGGCATG
TGTCCTTGATATATTTTGGAACATCTTTTGTGTATATGCCCAGTACTCAT
ATAGCTAGGTCTCCAGGTAGAACTATTTCCAACTTTTGTGAGGAACCAAC
AGATTGATTTCTAAAGTACAAGCTTGCAGTCCCACCAGCAGTGGAGGAGT
GTTCCTCTTTCTCTGTATCCTTGCCATCATCTGCTGTTGCCTGAATATTT
GATCTTAGCCATTCTGATTGGTGTGAAGCGGAACCTTGAGGTCCTTTTGA
TTTTCAGTTCCCTGAAGAGCAGGGATGTTGAAACATTTTN
TGGCGGCCGCCTTTCAAACAACTTTAGGTGACCTATAGTTGGCTACGCGA
AATTCACTAAGCCAGCATTATCCCCAACCATAATCTATCAATACTTGTCC
TTCCCACAGATAGGGATAATCCTTAGCCTTCATTAAGGAATACTCTATTT
ATATGAGATGGAGACCAGTTCAATGGATGAGAGTCAATCAGAATGCAGAG
AGTAGATTCCAGTCCTAGTTGATAAATCTACAAAACAATCTATCTGCTTA
GGCTAAGAGAACATTACAGAAGAGATACAGAAAGATCCTAAGATATTTTT
GTTGTCAATAAGATTTCCTCTCCTTGAAATGTTAGATGTTAGAACCACCA
AGCCTTATAACAATGATCACACACATGCTAACTGACAAAGCAAAACAATA
GACATTACAAAGTAGAAGAGAAAAGCCCCCAAGGCCTCAATTCTACATTA
AAGACTATACAAAATTAAGGAAAGCTTGGATGGTTGATTCCCAGGGAAGA
AGTCAACAACTGGTCACTGAAAGCTAAATATTCAGCCATGAGAACATCTT
TATAAGGACTAATATATGGACTGGAGAGATAATAATTAGTAATTTTTGCA
TATTTGTGTATGTGTGTGAAATACCATTCGCTTAAAAAATTCATGATTTT
GTAAGTCATTAAGGTATTTTAGACGTTTTGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_d16.b1 MSMg01no100_d16.b1 CHROMAT_FILE:
MSMg01no100_d16.b1 PHD_FILE: MSMg01no100_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:02 2005
         (334 letters)



>mm_chr14_89663865_89664598
          Length = 734

 Score =  646 bits (334), Expect = 0.0
 Identities = 334/334 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccttgaagaaataaataaaataatttgctttgttatatagattacaccacacctact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attccttgaagaaataaataaaataatttgctttgttatatagattacaccacacctact 260

                                                                       
Query: 61  gcagatcattgctatgagtcttctgcagtgtaaatcactataacattttaggttgttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagatcattgctatgagtcttctgcagtgtaaatcactataacattttaggttgttaaa 320

                                                                       
Query: 121 gtgggcttaacaataaaaaatattaaaatgagaaatagtgggaaagtaagtagagaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgggcttaacaataaaaaatattaaaatgagaaatagtgggaaagtaagtagagaaggg 380

                                                                       
Query: 181 agtaaattcgttgtcaatacttatttaatatttcaataatattttctgacttggtattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaaattcgttgtcaatacttatttaatatttcaataatattttctgacttggtattta 440

                                                                       
Query: 241 atattaatgttatatagtaattctgttatacaatgatccaaactactagaggaagcatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atattaatgttatatagtaattctgttatacaatgatccaaactactagaggaagcatct 500

                                             
Query: 301 acactttggtcttccttctttttaagctgcatat 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 acactttggtcttccttctttttaagctgcatat 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)