BAC Information

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BAC

Clone NameMSMg01-100J21
Chromosome14 (Build37)
Map Location 36,556,694 - 36,556,863
singlet/doubletsinglet
Overlap genenone
Upstream geneWapal, LOC100041341, Grid1
Downstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100J21.T7 (MSMg01no100_j21.b1)MSMg01-100J21.TJ (MSMg01no100_j21.g1)
ACCAG316267AG316268
length702777
length of high quality
(start - end)
---169 (205 - 373)
definitionCHROMAT_FILE: MSMg01no100_j21.b1 PHD_FILE: MSMg01no100_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:32 2005CHROMAT_FILE: MSMg01no100_j21.g1 PHD_FILE: MSMg01no100_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCGCTATACGACTCACTTTCGTACGGGATCCGCGGAACTCGGAATG
CCGAAAAAGAAAGTGATACTTCAACAATCCGATCGTGATCCTTTCATCCT
CGACTGATCAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXGACCGAGAAACGATATTCCAGAAAGAGCCTGCAAGCGA
CATATGTTCCTGTGTCACATATCCGTCACACAGCTCAGATGAACGGATCG
ACATACCTCTTCTTGGATTTTGCCGCATACCTTCATACCTATCTGAACGT
TTGCTAATTTTTCAATGAATGAGACTATTTTCCCGGCGACCACTTTGCTC
CGACACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATCC
CACGCCTTCTGGAGACTGATTTCGGATACAAAGGACTCTACACTAATTGT
ACGCCATGTGCTATCCCGTAGGACAGATGTTCTTTGGTGACGTCCGCCGG
ATAGCTTCACTGAAGCTGCAATCAGCCGCTAAGCTGACTAAGCGAGAGTT
CTCCTCGTTTTCGTAGACTTCCTCAACGTCCCCACCGTGAAAAGCGATTT
GACCCCGCAGAGCTCATTCAAACAAGCCAAGTGACGACTGCTATTGTGCC
AGCGGTTGCAAATTGACCGGGGAAAGTGCCCTGCCTACAGATTCCCGTGC
CA
NNNNNNNNNNNNNNNNNNNNCCCTTTTTNNTTCTCCCCTNNNNNCCATTA
TTNNNNNNTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTACACGAGAAATTCTCGCTGACCACCT
CAGGTATATTATCAGGAAATACAGGAAGGAAAGTGACATCCTTCTTTGGA
TAAGAATTTCTAAGTTTAAAAATAAAAGTTGTTTCATGTTTTGCATTATG
GTTAAAATCATCTTAATTTCCCCATTCTCATCTATAATAGACTTTGACAA
AATATGTCTTACTTTAGGATTTCTATTGCTATGATGAAACACCATGACCA
TAAGGAAGTTGGGAAAGCAAGGGTTTATTTGTTTTATACTTCTATTGTTG
AAGGAATTCTTGACAGGAACTCATATGGCCTGCACACCGAGTGCATGTAA
GGGTGCTGCTTACTGTCTTTTCATCACGCCCTTTGCAGACTGCCTTTTTA
GAGAACCCAGTACAGCTTCCTGCCTAGGTATGGCATTACCAAGAATGAGT
TGAGCCTTCTTTTCGTAACTATTCCCTTCAGTTAATAAATGCCCTACATA
TGTTATGTAGCCATTTTCTTAACTTACGCTCCTTCCACTCAAATAATTCA
AGCTTGTTTCAGGTTGATCGCAAAAAAATACAGTATAACCCTTTACTATA
AAACCCCAGCTATTTCGATCTATGCTACCGACAATGAGATCACCCTCTTT
CTTTTAAGGTTTCATTGCCTACTGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_j21.g1 MSMg01no100_j21.g1 CHROMAT_FILE:
MSMg01no100_j21.g1 PHD_FILE: MSMg01no100_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:32 2005
         (169 letters)



>mm_chr14_36556494_36557063
          Length = 570

 Score =  282 bits (146), Expect = 6e-81
 Identities = 164/170 (96%), Gaps = 1/170 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttctaagtttaaaaataaaagttgtttcatgttttgcattatggttaaaat-catct 59
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 201 aatttctaagtttaaaaataaaagttgtttcatggtttgcattatggttaaaatccatct 260

                                                                       
Query: 60  taatttccccattctcatctataatagactttgacaaaatatgtcttactttaggatttc 119
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 261 taatttccccattctcatctacaatagactttgacaaaatatgtcttagtttaggatttc 320

                                                             
Query: 120 tattgctatgatgaaacaccatgaccataaggaagttgggaaagcaaggg 169
           ||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 321 tattgctatgatgaaacaccatgaccaaaagaaagttgggaaagcaaggg 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 570
Length adjustment: 8
Effective length of query: 161
Effective length of database: 562
Effective search space:    90482
Effective search space used:    90482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)