BAC Information

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BAC

Clone NameMSMg01-100K02
Chromosome14 (Build37)
Map Location 15,721,723 - 15,722,144
singlet/doubletsinglet
Overlap geneNek10
Upstream geneGm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7
Downstream geneLrrc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100K02.T7 (MSMg01no100_k02.b1)MSMg01-100K02.TJ (MSMg01no100_k02.g1)
ACCAG316277AG316278
length920773
length of high quality
(start - end)
---418 (136 - 553)
definitionCHROMAT_FILE: MSMg01no100_k02.b1 PHD_FILE: MSMg01no100_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:33 2005CHROMAT_FILE: MSMg01no100_k02.g1 PHD_FILE: MSMg01no100_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNTTTTTCTTTCTTCTCTCTTTTCTCTTTCTCACCACCCAAACCCC
CCCTCTTCGTTTTNATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
CCAGAGAGAGAGCCGCGGAATTCTTATGTTTCCCCTAAGGAGGAGGGTCG
GGTACTCCACTGGGAAGACCAACAGTCAACTAACCTAGGACCCTTCGTTG
GCTCTCAGATGACTGAACCATCATCCCAAAGAGCATGCACGCGCCTCGGT
CCGATGTTCCTGCGCACATATGTCACGCAGATGTGCATGCTCATGTCTCC
TATGTGTGTACCTCCAACAATCTGTGAGTGTGTAGTTATACTCCTAACAG
CTGTCTGCTCTGTCTCGCACAATCCGCTTCCAGCAACTGGGCCCTACTTG
ATCTCGGTCTTACCCGCCTATATTATGTACCCTACACCCTCGCAGATGAC
TCTGACCGTTGATCGTGCCCTCAGCCGCTCGCGACTCCCCAAATGGCTAA
TCCCCACTTCTATAATTAGACAGAATGAGGTAGCCCCCCTTCTATTGCTT
CTCCCGCTTAAAGATGTTATACCTATTGGGTGTTAATTGTTCTCGGACTC
CACTATTATCCCTCTCTCACACTACTGGGACCTCATAACAACCACGAACA
TTCCCCCTACGGATCCTTCGCCTTTTATAACAGCAGATATAATTCATACT
TTTCCATAAGTCGCCTCCTCTCGACCTGCTACCCCAACCCCTCTCCCATA
CCCTCTAACTCTTCTCCCTCCTATCTCTGATCTCCCTGGCCTCACAAATA
ATTGCCTGCACACAATCCTCCCGACCAATTCTCTCTTTTTTAGCAATACC
CACCTGTATTCTCCACACTCTCACCCCCTTATTACTCCACAAAACCCACT
CCCCATCATTTTTTATTTTC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCNNCCC
CACATCTCTNNNCTCGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGCCACTGGCCTT
GAAGACAGAGGGAGCAGGAGGAGGGAACAGGGTTCGGACAGCTGTGTGTA
TGATGGAAAGACTTCTGGAGACAGTTTCAGTGAGATGACTCTACTTTAGT
GTTTCAGGGGGTGGGTATGTAAGGGTTACGGGTGGAATGGACTGTTTGTT
CATAACACAGCACCTAGCTATCATATGGGCAGGAAAGGCTGATTGGTCTA
ACACAGCACCTGATTGCCATACAGTCCGAATGTTTGAGCAGGATTTATAT
GCTGGATCATGACACTTGGAGGAAGCTCTGCGCAGGGTCATCCTCCAGAT
AAAGTCAAGCACCTGTTCTTAGGGACTCTCCCTAGATAAGGTCAGAGGAG
AAAGGGAAGCCCCACTGAGAAAGGAAGGCTTCCATTTTGCACCAAGCTTG
GAGAGCCACTTGGACATTGTGGTATGTTACCTAAATAGCAGGGCCTTCCA
GTAGATGCTCAGACTAGAATTAGACTACCCGTCTTTAAGTTGAACCCCAT
AATGCTGGCCTCAGTTTCCTTGTCTACTGTATGGGTATAATAACATCATA
GCCCATCTCTTTGGATTGCTGTCAAGGCCAATGTGACATTCCTGTTTGGG
GGCTGGGAAACTTCCTTTAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_k02.g1 MSMg01no100_k02.g1 CHROMAT_FILE:
MSMg01no100_k02.g1 PHD_FILE: MSMg01no100_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:33 2005
         (418 letters)



>mm_chr14_15721523_15722344
          Length = 822

 Score =  735 bits (380), Expect = 0.0
 Identities = 410/422 (97%), Gaps = 4/422 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgccactggccttgaagacagagggagcaggaggagggaacagggttcggacagctgt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cttgccactgaccttgaagacagagggagcaggaggagggaacagggtttggacagctgt 260

                                                                       
Query: 61  gtgtatgatggaaagacttctggagacagtttcagtgagatgactctactttagtgtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtatgatggaaagacttctggagacagtttcagtgagatgactctactttagtgtttc 320

                                                                       
Query: 121 agggggtgggtatgtaagggttacgggtggaatggactgtttgttcataacacagcacct 180
           |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggggagggtatgtaagggttatgggtggaatggactgtttgttcataacacagcacct 380

                                                                       
Query: 181 agctatcatatgggcaggaaaggctg----attggtctaacacagcacctgattgccata 236
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 381 agctatcatatgggcaggaaaggctggctgattggtctaacacagcacctgattgccata 440

                                                                       
Query: 237 cagtccgaatgtttgagcaggatttatatgctggatcatgacacttggaggaagctctgc 296
           ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtccgaagggctgagcaggatttatatgctggatcatgacacttggaggaagctctgc 500

                                                                       
Query: 297 gcagggtcatcctccagataaagtcaagcacctgttcttagggactctccctagataagg 356
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 gcagggtcatcctccagataaagtcaagcgcctgttcttagggactctccctagataagg 560

                                                                       
Query: 357 tcagaggagaaagggaagccccactgagaaaggaaggcttccattttgcaccaagcttgg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagaggagaaagggaagccccactgagaaaggaaggcttccattttgcaccaagcttgg 620

             
Query: 417 ag 418
           ||
Sbjct: 621 ag 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 822
Length adjustment: 9
Effective length of query: 409
Effective length of database: 813
Effective search space:   332517
Effective search space used:   332517
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)