BAC Information

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BAC

Clone NameMSMg01-101D23
Chromosome14 (Build37)
Map Location 90,023,168 - 90,023,524
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG328451, LOC100043336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101D23.T7 (MSMg01no101_d23.b1)MSMg01-101D23.TJ (MSMg01no101_d23.g1)
ACCAG316709AG316710
length787723
length of high quality
(start - end)
414 (102 - 515)457 (77 - 533)
definitionCHROMAT_FILE: MSMg01no101_d23.b1 PHD_FILE: MSMg01no101_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:23 2005CHROMAT_FILE: MSMg01no101_d23.g1 PHD_FILE: MSMg01no101_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTNNNNNNNNNNTTTTNTTTTTTNNNCCCCCCCNNCCTCTTCGTTCA
CTAATTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTATAGATAACCATGCTCCAGGTCCATGGATTTAACATT
AAAATAGTCATATTCTATGGAGAAGGTTTATTTACATTTTTTCATTCACT
TTCATAAAGAAAATTAAAAAATAGCCTCTATACAGGGATGTCAATAGCGT
ATTGTTTAGTCTACATGAAAATTACTTCATAGAGATTTTCCAGTTTTGGC
TTTTGTAGTAGAACTGAACATTTTTTTAATTTCCTTGGTTTCTGTTGTTA
TGTCTCCCCTTTTCATTTCTTGTTTTGTTAATTTGGCTACTCTCTCTGTG
CTCTCTGGTTAGTGTGGCTAAGGGTTTATCTATCTTGTTGATTTTCTCAC
AGAACCAGCTCCTGGTTTGGTTGATTCTTTGTACAGTTCTTTTAGTTTCT
ACTTGGTTGATTTTAGTCCTGAGATTGATTGTTTCCTGAAATCTACTCAC
CTTGCATGTATTTGCTTCTTTTTGTTCTAGAGCTTTCCAGTGTGCTGACA
AGCTGCTAGAACATGCTTACTTTGGTATCTTTTAGGAGTCTCTCAGAAGT
ATGAGTTTTCTTCTTAGGATTGATTGCGATAGAATTTCATAAGTTTTGGT
TATGTAGTGCCTTCATTTTCATTAAATTCTAAAGAGACTTTAAATTCTTT
CCTTTCCTCTCTTCCTTGATCACATTTTTATTCATCA
AATCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCGCCCTATGTGAGACAGATGT
CAAATACCCGTTCTACCCAAAGCTGGATTATGCCCCAAGATGGCAAAGAT
TTAGCAGCTGCCGTATTAGAAGCTGTTTCTCAATTACAGTAGCTAACATG
GCAGAGAAAAGAAGCTGTAATTATGGAAAATCATAATAGGTCTGAAGCTG
CTAGTATCATGAAATATCAATTGTTAGGTGAAGGTCAATTTGATGACTTA
AGACATAAGATGTAATTTTACAACGTTATTATACAATGTACTTTAGGAGA
CTTAAGAGTCTGAGATAAAATGAAGGCACAAAGAAAAAGGACTATGTCAT
CTACCAAGATTATGCAAAGTACCAGAAAAGCTTGCAGTGAATTATTACAT
AGATTAATGTCTACTATAAACAGAGCAATACTAGATACAATTAGGAGACA
GATGTTAATTGAAGTTTTAGCTTTAGAAAATGCAACTGCAGAGTATAAAT
AGTTCCTTACAAGCTCAGTCAGCACCCATAGGTGCCCAGATTAGAGCTGC
CACTGATACTGACCCTAATTACTATGTAATTGGATAAGCCATACCCTTCC
ATATCTAAATGTCTGGCGCTCCATCTGTGGGAGACAAGGTCTTTCGAAAA
GGGTTTCAGGGTAGGTGGTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_d23.b1 MSMg01no101_d23.b1 CHROMAT_FILE:
MSMg01no101_d23.b1 PHD_FILE: MSMg01no101_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:23 2005
         (414 letters)



>mm_chr14_90023168_90023981
          Length = 814

 Score =  683 bits (353), Expect = 0.0
 Identities = 356/357 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcattatagataaccatgctccaggtccatggatttaacattaaaatagtcatatt 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gaattcattatagataaacatgctccaggtccatggatttaacattaaaatagtcatatt 298

                                                                       
Query: 64  ctatggagaaggtttatttacattttttcattcactttcataaagaaaattaaaaaatag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ctatggagaaggtttatttacattttttcattcactttcataaagaaaattaaaaaatag 238

                                                                       
Query: 124 cctctatacagggatgtcaatagcgtattgtttagtctacatgaaaattacttcatagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 cctctatacagggatgtcaatagcgtattgtttagtctacatgaaaattacttcatagag 178

                                                                       
Query: 184 attttccagttttggcttttgtagtagaactgaacatttttttaatttccttggtttctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 attttccagttttggcttttgtagtagaactgaacatttttttaatttccttggtttctg 118

                                                                       
Query: 244 ttgttatgtctccccttttcatttcttgttttgttaatttggctactctctctgtgctct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ttgttatgtctccccttttcatttcttgttttgttaatttggctactctctctgtgctct 58

                                                                    
Query: 304 ctggttagtgtggctaagggtttatctatcttgttgattttctcacagaaccagctc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  ctggttagtgtggctaagggtttatctatcttgttgattttctcacagaaccagctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)