BAC Information

Click to search

BAC

Clone NameMSMg01-101O03
Chromosome14 (Build37)
Map Location 58,733,502 - 58,734,134
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
Downstream geneEG668177, EG668182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101O03.T7 (MSMg01no101_o03.b1)MSMg01-101O03.TJ (MSMg01no101_o03.g1)
ACCAG317176AG317177
length709840
length of high quality
(start - end)
637 (69 - 705)135 (135 - 269)
definitionCHROMAT_FILE: MSMg01no101_o03.b1 PHD_FILE: MSMg01no101_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:16 2005CHROMAT_FILE: MSMg01no101_o03.g1 PHD_FILE: MSMg01no101_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTGCTTACCCCAAGCTGGACTCTAACTCACTAAAATCTTCCTGTTT
CCACCTCAAGGACACTGGAATCACAGGTACAACCCAGCTGTGACACCCAG
CTTATTTTTAACTATTTCATCCCCAGTGCTCCTTATGTCATGCAACTATT
ATTCAATGCATACTTAAAGAAAGAAATGAATGACTGAAAGATTGCTTTGT
ATTTTCACCTCTTCGTTTAAGAATGTCTATTGCTGTATTCTTCTTATGCT
ATTAAGCTGATGCAATGGGAAATTTTAAGAGAGTAGTCATCAGTATGGTT
GGAGGAACTACCTTTGTCTGGATAGAAACCAGGTAAGTCCCAGAGGCAGG
GGTGGTCAAATGCCAAAGCCAGGGCTCTCTTCATCTTGAGGATAGCGTAG
TCCTTCTATAAGGTAGATGAAACCCAGTGAGATTCTCCAGCTAAGCCACT
GTGATATCAGAAAAAGATGCAGCCAGCCCATAATCCTAACAGACCTCTGT
GACACGAGACACAAATGAAAATACAGTACCTCCCACTCAACCCTCACATT
TCATCTTTGACCTTACCATCTCAGGAGCCTTAGTCTGTATCATGTGCACT
TTACAGTTCATGGTCCTGAATCTTGCTCATCCCAGGATTCATACCACACT
CCACTGTGC
TTTCTATCATTATCCCCCCCCCCACATTTCCACACCCACCTCNCCCCCTT
TTTTCNTNNTCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTGCACACATAACA
TTTATTTACCTAACCTCTGTTGACAAACATTCTGGTTGCTCCCAGGTTGG
AGCTATTATGGACAAATCTGTGATGCACATTCATATCCAGGCCCTAACAT
ATGCTTTCTACCTTCAAGGCATTTGATTGAGGCAGGTTCTCATTATGTAC
CCTTGTATGGCCAACAACTCGAAGTATATACCATACTGTCATTCATCTTC
AAGAAATCCACTTGCCAGCTAGTTTAAGTTTTTTTTTTACTTACTCTCAC
TGCGGTCTATATTACCTTAAATTTCATTCCTTTATCTTGATTGTTCTAGT
ATTTATATTATATCTTCAAAAAATAAACAATCACATGCTACTAAAAGCTC
TTAGCATACTTAATCTATCCAATCTATCCTTCATTTCTTTCTACCACCTA
CCTCTGCAATAAAAAACCCCCATATCATATATTAAAATAATTGTCTTAAT
TCTTTCATATATTTCACATCAACATTAATTTACTTAAATCAACACTCCTT
CTTACTTCTCTCCCCCTCTCCACTATTCGGTCTCCCTCCCAAACTCTTTA
TACTTCTCTTTCACTTCCTTTCAATCTACCTTACTCTTCCCACCCTCCAA
TGCCCTCCACATCTAACATTTCTCCATTATTATTTATTCTCGCTTTTTTT
CTTTTCCTTTTTCCCACATCCCATCATTTACATCTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_o03.b1 MSMg01no101_o03.b1 CHROMAT_FILE:
MSMg01no101_o03.b1 PHD_FILE: MSMg01no101_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:16 2005
         (637 letters)



>mm_chr14_58733302_58734338
          Length = 1037

 Score = 1131 bits (585), Expect = 0.0
 Identities = 621/633 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggactctaactcactaaaatcttcctgtttccacctcaaggacactggaatcacaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 ctggactctaactcactaaaatcttcctgtttccacctcaaggacactggaatcacaggt 774

                                                                       
Query: 61  acaacccagctgtgacacccagcttatttttaactatttcatccccagtgctccttatgt 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 773 acaacccagctgtgacacccagcttgtttttaactatttcatccccagtgctccttatgt 714

                                                                       
Query: 121 catgcaactattattcaatgcatacttaaagaaagaaatgaatgactgaaagattgcttt 180
           |||||||||||||| |||||||||||||||||||||| ||| || |||||||||||||||
Sbjct: 713 catgcaactattatccaatgcatacttaaagaaagaactgagtggctgaaagattgcttt 654

                                                                       
Query: 181 gtattttcacctcttcgtttaagaatgtctattgctgtattcttcttatgctattaagct 240
           |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 653 gtattttcacctcttcttttaagaatgtctattgctgtattcttcctatgctattaagct 594

                                                                       
Query: 241 gatgcaatgggaaattttaagagagtagtcatcagtatggttggaggaactacctttgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gatgcaatgggaaattttaagagagtagtcatcagtatggttggaggaactacctttgtc 534

                                                                       
Query: 301 tggatagaaaccaggtaagtcccagaggcaggggtggtcaaatgccaaagccagggctct 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 533 tggatagaaaccaggtaagtcccagaggcaggggtggtcaaatgccaaggccagggctct 474

                                                                       
Query: 361 cttcatcttgaggatagcgtagtccttctataaggtagatgaaacccagtgagattctcc 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 473 cttcatcttgaggatagcgtagtccttctacaaggtagatgaaacccagtgagattctcc 414

                                                                       
Query: 421 agctaagccactgtgatatcagaaaaagatgcagccagcccataatcctaacagacctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agctaagccactgtgatatcagaaaaagatgcagccagcccataatcctaacagacctct 354

                                                                       
Query: 481 gtgacacgagacacaaatgaaaatacagtacctcccactcaaccctcacatttcatcttt 540
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gtgacacaagacacaaatgaaaatacagtacctcccactcaaccctcacatttcatcttt 294

                                                                       
Query: 541 gaccttaccatctcaggagccttagtctgtatcatgtgcactttacagttcatggtcctg 600
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 293 gaccttaccatctcaggagccttagtctgtatcatgtgcactgtacagttcatggtcctg 234

                                            
Query: 601 aatcttgctcatcccaggattcataccacactc 633
           ||||||||||||||||||||||| |||||||||
Sbjct: 233 aatcttgctcatcccaggattcacaccacactc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)