BAC Information

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BAC

Clone NameMSMg01-101P23
Chromosome14 (Build37)
Map Location 41,602,528 - 41,602,920
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040439, LOC218945, LOC100040470, LOC382876
Downstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101P23.T7 (MSMg01no101_p23.b1)MSMg01-101P23.TJ (MSMg01no101_p23.g1)
ACCAG317262AG317263
length788720
length of high quality
(start - end)
397 (109 - 505)400 (77 - 476)
definitionCHROMAT_FILE: MSMg01no101_p23.b1 PHD_FILE: MSMg01no101_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:26 2005CHROMAT_FILE: MSMg01no101_p23.g1 PHD_FILE: MSMg01no101_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCCCCCCCCCCCCCCCT
TTATTTANTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXGCCGCGGAATTCTTTGTTTATCCCTGTACCCCATTTTTAGGGGGT
TATTTGATTTTCTGGAGTCCAACTTTTTGAGTTCTTTGTATATATTGGAT
ATTAATCCCCTATCAGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGT
TGGTGGCTTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTT
ACAATTTTTCTGAGGTACCATTTGTCGATTCTTGGTCTTACAGCACAAGC
CATTGGTGTTCTGTTTAGGAATTTTTCCCCTGTGTCCATATCTTTGAGGC
TTTTCCCCACTTTTTCCTCTATTAATTTCAGTGTCTCTGGTTTTATGTGG
AGTTCCTTGATCCACTTATACTTTAGCTTTGTACAAGGAGGTAAGAATGG
ATCAATTCGCATTCTTCAACATGATAACTGCCAATTGAGCCAGCTTCATT
TGTTGAAAATGCTGTCTTTTTTCCACTGGATGGATTTAGCTCCCCTTGTC
AAGATCAAGTGTCCATCGGTGCGCGCGATCATTTCTGGGTCTTCAAATTC
TTATTCTTTGCTCTACTTGTCTGTCGTATATACCAATAACTTGTTATATT
TAACACAATTACATGATTCTCATTTTAAATTCTGATTAATTTAAATCCTA
ACCTAACTTATCTGCTAATTTTTAATATATATTATATT
TTTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGAAAGAACTCCCATTTCAACTA
AAGGTCAGAGAAAATTCTGGCTGCTGCCATTAATTGTATATATTTTATAA
CTTGAAGGATTTCCCTCAGGTAAACATCATGTGTTTCAAACCTTCTGATT
CCTTCAGCCCCCACCCTCATTGAATTCTGGGGGCAGCTACACATGAGCAT
GCTCCTAGGGAGACAGAACTGGTAGCCCTTCACAGCCACAACAGGTCGTC
ACAGGAGCCAGAGTCTATTGTGTATTATTATGCGGGTACTATTCCCACTG
CATCTCCTTTGTCTTCTAGCTCTGTGTAAAGCAGGGCTGTCCATTGCTGC
ACAAGGACTTTGAACTGCAGGGGGCAGCACAAGCTATGAGCAAAGGCCGA
GCAAGGCTCTAGAGGACCCTAGTAAGGATGATGGGTAAGCTTTCACAGCA
TACATTTTTCCCACTTCTCCTGAGCTGATTCAAAATCATCAACCAGTGTT
ACTTGCGTTCTTTGCTTTAATGACTACTTTCCTCACCATAATCCTGACCT
CTGCAATATTCTCAAGTGCTGTTGGAACAGGAAAACTGTGCGTTTCCCTT
TCACTTCTAAAGTGTAGGTTTATTCATTCAGAGAATCATGGATTAGCCAG
GTATGACCCTCTGGTTGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_p23.g1 MSMg01no101_p23.g1 CHROMAT_FILE:
MSMg01no101_p23.g1 PHD_FILE: MSMg01no101_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:26 2005
         (400 letters)



>mm_chr14_41602121_41602920
          Length = 800

 Score =  729 bits (377), Expect = 0.0
 Identities = 389/393 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   aactcccatttcaactaaaggtcagagaaaattctggctgctgccattaattgtatatat 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aactcccatttcaactaaaggtcagagaaaattctggctgctgccattaattgtatatat 741

                                                                       
Query: 68  tttataacttgaaggatttccctcaggtaaacatcatgtgtttcaaaccttctgattcct 127
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 740 tttataacttgaaggatttccctgaggtaaacatcatgtgtttcaaaccttctgattcct 681

                                                                       
Query: 128 tcagcccccaccctcattgaattctgggggcagctacacatgagcatgctcctagggaga 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcagcccccaccctcattgaattctgggggcagctacacatgagcatgctcctagggaga 621

                                                                       
Query: 188 cagaactggtagcccttcacagccacaacaggtcgtcacaggagccagagtctattgtgt 247
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagaactggtagccctttacagccacaacaggtcgtcacaggagccagagtctattgtgt 561

                                                                       
Query: 248 attattatgcgggtactattcccactgcatctcctttgtcttctagctctgtgtaaagca 307
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 560 attattatgcgggtactattcccactgcatctcctttgtcttctagctctgtctaaagca 501

                                                                       
Query: 308 gggctgtccattgctgcacaaggactttgaactgcagggggcagcacaagctatgagcaa 367
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 500 gggctgtccattgctgcacaaggactctgaactgcagggggcagcacaagctatgagcaa 441

                                            
Query: 368 aggccgagcaaggctctagaggaccctagtaag 400
           |||||||||||||||||||||||||||||||||
Sbjct: 440 aggccgagcaaggctctagaggaccctagtaag 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)