BAC Information

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BAC

Clone NameMSMg01-102L11
Chromosome14 (Build37)
Map Location 17,746,586 - 17,746,895
singlet/doubletsinglet
Overlap genenone
Upstream gene1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb
Downstream geneTpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102L11.T7 (MSMg01no102_l11.b1)MSMg01-102L11.TJ (MSMg01no102_l11.g1)
ACCAG317784AG317785
length701775
length of high quality
(start - end)
350 (63 - 412)310 (129 - 438)
definitionCHROMAT_FILE: MSMg01no102_l11.b1 PHD_FILE: MSMg01no102_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:23 2005CHROMAT_FILE: MSMg01no102_l11.g1 PHD_FILE: MSMg01no102_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAGCCGCGGATTCTCA
CCTGAGCATAACGAATGGCAGAGAAGCACCTGAAAAAATGTCAACATCCT
TAATCATCAGGGACATGCAAATCAAAACAACCCTGAGATTCTACCTCACA
CAAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCA
TGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGC
TTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGAC
ATAGCACTATCGGATGATCCAGCAATACCTCTCCTGGGCATATATCCAGA
AGATGCCCCAACTGGTAAGAAGGACACATGCCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGATGGAAAGAACCCAGATGCCCCTCAACAG
AGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCA
GCTATTAAAAAAATGAATTTATGAAACTCCTAGGCAAATGGATGGATCTG
GAGGGCATCCTCCTGACTGAGGCAACACATTCACAACGAAACTCTCCCAC
TATGTACTCCCTGACAAATGGATATTACCCTCAACCCCAGGATTCCCCCA
ATCTTATCATACCATTCGGCCATACTCACGACCCCCAAGACAAATGAACA
C
NNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCNNNCCATGAATCTC
CCACTCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCATTCAGACACGGAAAGGAC
ACATAAAAGCTCATAGAGGAGAGCAAAGCCCAGTGCAAAACCATGAAACT
AGTCTCCACAGATGCAACTGCTGTCTATAGAGAACAGACTGAATAAACCG
AGGCAGAAGAATCATTGTGCAGAAGGGCTGTACCACTCCATATCACTATT
CTCAAATGCTTTTTTGACTATTAAAATGTTAGGATCAAGTGCATCAAAGC
ATGACAATAAAAAATAAGGGTAGCCACCCACAACTATATCATGTTTAAAG
TTGAACACAAATGATGGCAATAAAGTTCTGGACAGTGGCCAGAAGGACAA
AGAGACATGATACAAGGGAACACCATTGTAAGAAAATGGTGTTTTATGGG
AGGTGACAGGCAGGGAGGTAATGCATTGACATCTTTACAGTGCTGAAATT
TAAACAGAAAGCCGAACACTGACCAAGGCAAGGGTTGTCATCTGACAAAA
TGTTCTCACTGGAAAAGGCAATCCAGAACCTTTTCCTGAATATGTAAATA
CTTAATTACTTTAGCACCAGCACACTATACTTTTCTCACTGGGACCGCAT
TGTAGACATAGGAAATCGTATATATATCTATGATCCTTATACTGCTAGAG
AGAGTCACAAAGAATTAATGGCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_l11.g1 MSMg01no102_l11.g1 CHROMAT_FILE:
MSMg01no102_l11.g1 PHD_FILE: MSMg01no102_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:23 2005
         (310 letters)



>mm_chr14_17746386_17747095
          Length = 710

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcattcagacacggaaaggacacataaaagctcatagaggagagcaaagcccagtgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcattcagacacggaaaggacacataaaagctcatagaggagagcaaagcccagtgcaa 260

                                                                       
Query: 61  aaccatgaaactagtctccacagatgcaactgctgtctatagagaacagactgaataaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccatgaaactagtctccacagatgcaactgctgtctatagagaacagactgaataaac 320

                                                                       
Query: 121 cgaggcagaagaatcattgtgcagaagggctgtaccactccatatcactattctcaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgaggcagaagaatcattgtgcagaagggctgtaccactccatatcactattctcaaatg 380

                                                                       
Query: 181 cttttttgactattaaaatgttaggatcaagtgcatcaaagcatgacaataaaaaataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttttgactattaaaatgttaggatcaagtgcatcaaagcatgacaataaaaaataag 440

                                                                       
Query: 241 ggtagccacccacaactatatcatgtttaaagttgaacacaaatgatggcaataaagttc 300
           || ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ggaagccacccacaactacatcatgtttaaagttgaacacaaatgatggcagtaaagttc 500

                     
Query: 301 tggacagtgg 310
           ||||||||||
Sbjct: 501 tggacagtgg 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)