Query= MSMg01no102_n04.b1 MSMg01no102_n04.b1 CHROMAT_FILE:
MSMg01no102_n04.b1 PHD_FILE: MSMg01no102_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:32 2005
(388 letters)
>mm_chr14_115998313_115999100
Length = 788
Score = 743 bits (384), Expect = 0.0
Identities = 387/388 (99%)
Strand = Plus / Plus
Query: 1 acattccctcctctccatcatcttatatgttgcttcaaggtatatttatattttattaca 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattctctcctctccatcatcttatatgttgcttcaaggtatatttatattttattaca 260
Query: 61 tttttaaattttatggtaaaatatacaaaattcctcatctgttttataacagtatatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttaaattttatggtaaaatatacaaaattcctcatctgttttataacagtatatttc 320
Query: 121 tggtgtttaagagttaatatgtctcttttattgttttatgttcatgtttatatgactgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtgtttaagagttaatatgtctcttttattgttttatgttcatgtttatatgactgct 380
Query: 181 aagcaaactcctttgtacctgtcaactgtaatccgtggctgttcttaccaagtggaacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcaaactcctttgtacctgtcaactgtaatccgtggctgttcttaccaagtggaacct 440
Query: 241 ggaaattttctctttgaagtaataaagcagtcagagctggagggcattttctgagttttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaattttctctttgaagtaataaagcagtcagagctggagggcattttctgagttttc 500
Query: 301 tagcatgagattgctgtgtgatttaatggacactatggtcttctctagttctcttgtcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcatgagattgctgtgtgatttaatggacactatggtcttctctagttctcttgtcct 560
Query: 361 gcttaccaaaaccctctctgagtcagga 388
||||||||||||||||||||||||||||
Sbjct: 561 gcttaccaaaaccctctctgagtcagga 588
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no102_n04.g1 MSMg01no102_n04.g1 CHROMAT_FILE:
MSMg01no102_n04.g1 PHD_FILE: MSMg01no102_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:32 2005
(520 letters)
>mm_chr14_116118985_116119905
Length = 921
Score = 984 bits (509), Expect = 0.0
Identities = 518/521 (99%), Gaps = 1/521 (0%)
Strand = Plus / Minus
Query: 1 cactgtggaaaaa-tatttctcctgaatatttgattccatgaacttatgtagacatatct 59
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cactgtggaaaaagtatttctcctgaatatttgattccatgaacttatgtagacatatct 662
Query: 60 ctatattggatttcaataagtctgcaaaaatgaaatgtctacctttagtcagctttgatt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctatattggatttcaataagtctgcaaaaatgaaatgtctacctttagtcagctttgatt 602
Query: 120 tatatctatacaaatttaattccaacatgtagtgacataaaatctgtaaaataacttggc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tatatctatacaaatttaattccaacatgtagtgacataaaatctgtaaaataacttggc 542
Query: 180 accagaataaacatatagcaagagtttttattcttttttcctcaaaatgaaactatgggt 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 accagaataaacatatagtaagagtttttattcttttttcctcaaaatgaaactatgggt 482
Query: 240 cttttataaaatcattgtcatttgttcatagcagaatattgactcctattaattttagta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cttttataaaatcattgtcatttgttcatagcagaatattgactcctattaattttagta 422
Query: 300 ttgaaacattaaaaatatggattgtttaggaaataatcttcacttaagaatttcctaatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttgaaacattaaaaatatggattgtttaggaaataatcttcacttaagaatttcctaatt 362
Query: 360 taatttgttctttaataatttcatgtatgtacataatgtaatataactactctcactcca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taatttgttctttaataatttcatgtatgtacataatgtaatataactactctcactcca 302
Query: 420 cattatttctctgttttaaactcctggataatctcttcttttcaaacattcatggctaat 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cattatttctctgttctaaactcctggataatctcttcttttcaaacattcatggctaat 242
Query: 480 tcattttgtcctgaggcccactgagtgtatccatgtttatc 520
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcattttgtcctgaggcccactgagtgtatccatgtttatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space: 464610
Effective search space used: 464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
