NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNCCCCCCCNNNNNC
CAATTTAAAGNNGTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
CAAAGAGAGAGCCGCGGAATTCAATCTTTCCCAAAAAAGCGAGCAAAGTA
TGTTAATATGAGGATTCATATATCAGTATCTTGGATATCAACAGCCCAAG
CCCCTTATAGTTATGCTGGCTACTTGCTAAGTACACAGTTGAATAACAAA
CGATAAGGACTCTAAAATAAAATTGCTTCTCTTTACCTCTTCACAGTTGA
GTTTGTAATGGTTGGATGGATATCCATGTTTCACCATTGAAACTGTAAAG
ACCCCATTCCCCCAACACTAGGAACAAGCACTTTTTTTTTTCCTCTTAAC
TCTGTCAAAGAAAGTTTCACTGATGTTTTTTTTTTCCCCCCCCCCCCCCT
TGAAATTATTCTTTTAGATTTAACTCTAGTGACTTGCTTTTTAAAAACTG
AAAATAGGCGGGGAAAGAATTTTTTTTTATACTTTAATGTCCACTGATTT
AAAACGTTCTCGTTTCCAATCCACTTTTTTTCACCAATAAGCCCTCCTTA
GATTAAATGTGAGACACTGATATCTTTTATTATTCCACCTTTTACTCAAA
ATAAACACTAATTATTTACAACCATACAATTCGAATCTTTACATTCCTAT
CCTCCACGGCGATGTTATCCTAATCTTTTATACTCTTCCCTCACTTTCAC
CTTGCGCCTCTCCTACCTTATTTCCATGCGGTCGCAAACTTCTAAATTTA
AACCTTTCTATTTTTG

GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTACAATTTCTAAAAGGAAATCTAATCA
CTAGCTTTTAAATTGAATTTTTAAAACGAATCTTTAGCTTTGTACTTTTA
AAGACTTTTTTAAAAAGTTATTTGTTTAAAACTTTATGGAGAAAACATTT
TCAGATGAATTTTACCAGGTTGGATTCTGAAGACATGAGAAAAAAACTGC
ATGGCTAGGTGTTATAGTTTGTCTTTATTCATTGGTGGGAAGAAACCCAT
AAGCTTCCCAATATAACATATTTGGGATTTGATTCTCTGATTCTACAAGC
CAGTTCCCATCTCATCACCACCCCCCCACTCATGAAAGGCAGAAAACAGA
AATAAAATTATCTGAGAATATAATCCTTAGATGACCGAATCTTTCTCGTT
CTTAAATTAAAAATGAGAGAGAAAAATAACACAGAGTAACCCTGTGCTGT
ATAAGAAGGATAGAAAACTTCTGTTCCATGATACTGACATTATGTCCTCT
CGAGAAAATTGTATAAATTGCCTGCCTATGATTGGATCACTTTGAGAGTC
ATGCCTATACAGAAATGCCCCCCTTGACACTGCCTGGCAGTATCCGACAC
CTCAGCTTATATTGGTCCTTATTTTACCACACACTATACCCGCCACCATT
TGATTACTGCCCCGTACTGATTCTTT

Query= MSMg01no102_p08.b1 MSMg01no102_p08.b1 CHROMAT_FILE:
MSMg01no102_p08.b1 PHD_FILE: MSMg01no102_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:42 2005
         (198 letters)



>mm_chr14_116185331_116185928
          Length = 598

 Score =  364 bits (188), Expect = e-105
 Identities = 194/196 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagtatgttaatatgaggattcatatatcagtatcttggatatcaacagcccaagccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagtatgttaatatgaggattcatatatcagtatcttggatatcaacagcccaagccc 260

                                                                       
Query: 61  cttatagttatgctggctacttgctaagtacacagttgaataacaaacgataaggactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 cttatagttatgctggctacttgctaagtacacagttgaataacaaacgataagggctct 320

                                                                       
Query: 121 aaaataaaattgcttctctttacctcttcacagttgagtttgtaatggttggatggatat 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 aaaataaaattgcttctctttacctcttcacagttgagtttgtcatggttggatggatat 380

                           
Query: 181 ccatgtttcaccattg 196
           ||||||||||||||||
Sbjct: 381 ccatgtttcaccattg 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no102_p08.g1 MSMg01no102_p08.g1 CHROMAT_FILE:
MSMg01no102_p08.g1 PHD_FILE: MSMg01no102_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:42 2005
         (244 letters)



>mm_chr14_116334933_116335576
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatttctaaaaggaaatctaatcactagcttttaaattgaatttttaaaacgaatcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caatttctaaaaggaaatctaatcactagcttttaaattgaatttttaaaacgaatcttt 385

                                                                       
Query: 61  agctttgtacttttaaagacttttttaaaaagttatttgtttaaaactttatggagaaaa 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 agctttgtacttttaaagacttttttaaaaagttatttgtgtaaaactttatggagaaaa 325

                                                                       
Query: 121 cattttcagatgaattttaccaggttggattctgaagacatgagaaaaaaactgcatggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cattttcagatgaattttaccaggttggattctgaagacatgagaaaaaaactgcatggc 265

                                                                       
Query: 181 taggtgttatagtttgtctttattcattggtgggaagaaacccataagcttcccaatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taggtgttatagtttgtctttattcattggtgggaagaaacccataagcttcccaatata 205

               
Query: 241 acat 244
           ||||
Sbjct: 204 acat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)