BAC Information

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BAC

Clone NameMSMg01-103B22
Chromosome14 (Build37)
Map Location 111,750,616 - 111,852,375
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103B22.T7 (MSMg01no103_b22.b1)MSMg01-103B22.TJ (MSMg01no103_b22.g1)
ACCAG318073AG318074
length764712
length of high quality
(start - end)
250 (91 - 340)516 (72 - 587)
definitionCHROMAT_FILE: MSMg01no103_b22.b1 PHD_FILE: MSMg01no103_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:56 2005CHROMAT_FILE: MSMg01no103_b22.g1 PHD_FILE: MSMg01no103_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,750,616 - 111,750,865)(111,851,860 - 111,852,375)
sequence
NCAGTAGACCNTCGAGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTCGAGAATACCGCGGAATTCAGTCTCAGATTTCCCAGATGCTTTTAGCT
AACATAAATATTACATGATTACCATTGAAACAAAAACATGCTTTATTTAA
TATAACCCATATTATCTCTTTTTATAGGTTCTAGTATTATTGATAACAAA
AGGGTTTCAACTTCTTTATCTTATTTTTGAAATAAAAGTATATGAATATG
GAAAATATTGAAATGAAATAGACCTGATATCATGAGAACTAATATTCTCT
TTGTTTGTTTTATACGCATTTTCACAATCTATAAAAGTGTGTGTTTGTTC
ATTCACTGTGCTTATACTCTCACGGTTATAACTTATGATAACTACACACG
CATACTTGTAACATATGATGATGAAGAAAAATGGCTCCCACCTTCTGGCA
CATAACACATGCCATGTTATTTGAACCATAATACGACTACATTATGCAAA
TTATACATCATATATTTATCGAATACATATTATAGCACATAACGCCGTTC
CGCCGTTTCACTGTTACCTTCTGTTTTCCTTACCCTTGATTCTCCCTCCT
CTCTACCGCACACCAATTATATATTTGTTATAGCCTCGACCTTTACTATT
TTTGATTGATAATCCTTTTTTTATCTCTTACTAATCTTTTACCTATTATA
TCCCCCTGTCTATCCTTTCCATTTCTCCCCCCCTGTTCCCGTCCTTATAT
CTTCTGTTCTCCCG
NCGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACTTTGTAGACCAGGCTGGCCTCGAACT
CAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGAAGTGTG
CCACCAAGCATGGCGAGCATATACACAAACATACAAGAAACACACAAGCA
CAGGCATACGTCTACACACAGAGATCTGTTATAGATGGAGGTTAGGATGT
ATTTATACATTGTTTCTTCTTTTATAGCTATTTCTCCTGTCCCTTCCAAA
AATGTCCCCTTTAAACACTGCTTTTGAGAGTGTAAAAAGGAGCTTACTGA
TAGAAAATAAATGTAGGCAGCTGTTTCAGGATATTTGGTCACATTGTGAA
TCCTTAAACTGTATTATTTTTTTTTAATAATCTGTTCCTAATTTGCTATG
GCTCAGCATTAACACAGACATCTAATCCATGAGCTTTCTGTGTATTGCAA
ATGGGATTAAATAAAGTCAACCATAGGGCTGGAAACAAAAAGCAACCAGT
TGACAGGGAGTAAACATAGGAAAAATAAACATAGTAAAAGGAAGTCAGGA
GGACAAAAGGGAGGCACATAGCAAGTTGAAGGTAGGGAAGCTCAGCTTGA
GAGGTTTTTGAGATGGCATGCAAAAAGAGAATTTCCATCACAGATATTAC
CAGTGTGCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_b22.b1 MSMg01no103_b22.b1 CHROMAT_FILE:
MSMg01no103_b22.b1 PHD_FILE: MSMg01no103_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:56 2005
         (250 letters)



>mm_chr14_111750416_111751065
          Length = 650

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttttagctaacataaatattacatgattaccattgaaacaaaaacatgctttatttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttttagctaacataaatattacatgattaccattgaaacaaaaacatgctttatttaa 260

                                                                       
Query: 61  tataacccatattatctctttttataggttctagtattattgataacaaaagggtttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tataacccatattatctctttttataggttctagtattattgacaacaaaagggtttcaa 320

                                                                       
Query: 121 cttctttatcttatttttgaaataaaagtatatgaatatggaaaatattgaaatgaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctttatcttatttttgaaataaaagtatatgaatatggaaaatattgaaatgaaata 380

                                                                       
Query: 181 gacctgatatcatgagaactaatattctctttgtttgttttatacgcattttcacaatct 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 gacctgatatcatgagaactaatattctctttgtttgttttatatgcattttcacaatct 440

                     
Query: 241 ataaaagtgt 250
           ||||||||||
Sbjct: 441 ataaaagtgt 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no103_b22.g1 MSMg01no103_b22.g1 CHROMAT_FILE:
MSMg01no103_b22.g1 PHD_FILE: MSMg01no103_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:56 2005
         (516 letters)



>mm_chr14_111851783_111852698
          Length = 916

 Score =  905 bits (468), Expect = 0.0
 Identities = 504/516 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactttgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcctcccgagtg 60
           |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 593 cactttgtagaccaggctggcctcaaactcagaaatctgcctgcctgtgcctcccgagtg 534

                                                                       
Query: 61  ctgggattaaagaagtgtgccaccaagcatggcgagcatatacacaaacatacaagaaac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 533 ctgggattaaagaagtgtgccaccaagcatggcgagcatatacacaaacataaaagaaac 474

                                                                       
Query: 121 acacaagcacaggcatacgtctacacacagagatctgttatagatggaggttaggatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 acacaagcacaggcatacgtctacacacagagatctgttatagatggaggttaggatgta 414

                                                                       
Query: 181 tttatacattgtttcttcttttatagctatttctcctgtcccttccaaaaatgtcccctt 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 413 tttatacattgtttcttcttttatagttatttctcctgtcccttccaaaaatgtcccctt 354

                                                                       
Query: 241 taaacactgcttttgagagtgtaaaaaggagcttactgatagaaaataaatgtaggcagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 taaacactgcttttgagagtgtaaaaaggagcttactgatagaaaataaatgtaggcagc 294

                                                                       
Query: 301 tgtttcaggatatttggtcacattgtgaatccttaaactgtattatttttttttaataat 360
           |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 293 tgtttcaggatatttggtcacattgtgaatccttaagctgtattattattttttaataat 234

                                                                       
Query: 361 ctgttcctaatttgctatggctcagcattaacacagacatctaatccatgagctttctgt 420
           ||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 233 ctgtttctaattttctatggctcagcattaacacagacatctaatccatgagttttctgt 174

                                                                       
Query: 421 gtattgcaaatgggattaaataaagtcaaccatagggctggaaacaaaaagcaaccagtt 480
           |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 173 gtattgcaaatgtgattaaataaagtcaaccatagggcaggaaacaaaaagcaaccagtt 114

                                               
Query: 481 gacagggagtaaacataggaaaaataaacatagtaa 516
           ||||||||||||||| ||||||||||||||||||||
Sbjct: 113 gacagggagtaaacacaggaaaaataaacatagtaa 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)