BAC Information

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BAC

Clone NameMSMg01-104H17
Chromosome14 (Build37)
Map Location 52,994,837 - 52,995,360
singlet/doubletsinglet
Overlap genenone
Upstream geneEG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512
Downstream geneOlfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104H17.T7 (MSMg01no104_h17.b1)MSMg01-104H17.TJ (MSMg01no104_h17.g1)
ACCAG319083AG319084
length714688
length of high quality
(start - end)		528 (41 - 568)395 (66 - 460)
definitionCHROMAT_FILE: MSMg01no104_h17.b1 PHD_FILE: MSMg01no104_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:45 2005CHROMAT_FILE: MSMg01no104_h17.g1 PHD_FILE: MSMg01no104_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATT
CACTCTGTATACCAGGCTGCCCTCGAACTCAGAAATCTGCCTGACTCTGA
CTCTGACTCTGACACTGACTCTGACTCTGACTCTTAAACTCACTATTCAA
ACCAATGCTTGACTAATGTATTTATTATTATTTTGTTATTTTATTTATTA
TTTGGTTTGCTATTTGTTGATGTTCAGTAAAACAAAACACTTGTGGACAG
GCAACCACAAGGCTTTATTGGAAAACACACACACTTTGTTGGATGCCACA
CTCCATTATGGCTGTGAGATTTCTCTGTCATTTAACCTCTGGGGGTCATG
AGAACTCTACCTGGATGCACATGACATTATTCATTACACTATGACCCGTT
TGTTTTTAACTACAACATTAGCATTGTTCACTCTCTCTTCTCTCCAGCCA
CTCCCATGTCTTCCATAGGAAGCATGGCCTCTTGCTCTTAAATTCCTCTT
ACATGTATAGGAAACTTTATAAGTATATAAAACTTTAGTCTGTGATTTTT
GCTACCACACTCCAGTGAGGGAGAGATTGCAGTATTGCGACTGTTTCAGT
GCCCGAACTGAACTCAGTCCATTGTGTACGTTACTGTCCAGTGCTCTCCA
TGGGCCTCACCCTCCCCCCAAATGAGGCTTCCATGGTGCTTGGTTTCTTT
CCCCTTCTGCAATA

NCCGATGATAGGGGAGGCCTGGCGGCGCCTTTCCAAAAATGTAGGTGACC
TATAGATTGCCCCGCGGAATTCAGGTTGTCATGATTGGTGGCAGGCCCCT
CTTCTCACCAAACCATCTCACTGACCCTGACAGGGTTTTGATATATAGGG
CAATCTGGCTTAGAACTCACTATATAAGCCAGGCTAGTCTCAAACTTGTG
AACCTCCTGCCTCTGCCCCAGAGTGCATATATGTACCACTGCATTAAATC
GAAGCCAGGACTTTCTTTTGTCCTATAAATACATTTTTTTTTCTGAAAAC
TAGAACTACAAAGTGTTGCCAAAACTGTAAAGTGGAGCCCTTGTGAACTG
CTGGGAGGAGCCCAGCAATGGTCCTTATTGTTGCAGTGCACAACATTGCA
GTGGTTCCTCAAAAATGAAACACACAGTGTTCACGTGATCCGGTAACCCG
GCTGCTGGTGTAGCCAAAGGAACTCGAAGGTAAGAACGGAACAGACATAG
CTTCGTTCCCATGTTCATGACAATATCAGTCACAGCAGCTACCAACTGGT
AGCAGCCGAGCGTCCACATAGAGAGAGGAATGAAATGTGGCAACAGTGCA
CACCACAATCCTGAAAAGGCTAGTCTTAAAACCTGCTGCAACATGGACAC
GTTCTGAGACACGGCGCCAGATAAAGGAAGCCCTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_h17.b1 MSMg01no104_h17.b1 CHROMAT_FILE:
MSMg01no104_h17.b1 PHD_FILE: MSMg01no104_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:45 2005
         (528 letters)



>mm_chr14_52994474_52995401
          Length = 928

 Score =  963 bits (498), Expect = 0.0
 Identities = 519/526 (98%), Gaps = 4/526 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcactctgtataccaggctgccctcgaactcagaaatctgcctgactctgactct 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 ggaattcactctgtagaccaggctgccctcgaactcagaaatctgcctgactctgactct 828

                                                                       
Query: 65  gactctgacactgactctgactctgactcttaaactcactattcaaaccaatgcttgact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gactctgacactgactctgactctgactcttaaactcactattcaaaccaatgcttgact 768

                                                                       
Query: 125 -aatgtatttattattattttgttattttatttattatttggtttgctatttgttgatgt 183
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 aaat-tatttattattattttgttattttatttattatttggtttgctatttgttgatgt 709

                                                                       
Query: 184 tcagtaaaacaaaacacttgtggacaggcaaccacaaggctttattggaaaacacacaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tcagtaaaacaaaacacttgtggacaggcaaccacaaggctttattggaaaacacacaca 649

                                                                       
Query: 244 ctttgttggatgccacactccattatggctgtgagatttctctgtcatttaacctctggg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ctttgttggatgccacactccattatggctgtgagatttctctgtcatttaacctctggg 589

                                                                       
Query: 304 ggtcatgagaactctacctggatgcacatgacattattcattacactatgacccgtttgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ggtcatgagaactctacctggatgcacatgacattattcattacactatgacccgtttgt 529

                                                                       
Query: 364 ttttaactacaacattagcat-tgttcactctctcttctctccagccactcccatgtctt 422
           ||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct: 528 ttttaactagaacattagcatat-ttcactctctcatctctccagccactcccatgtctt 470

                                                                       
Query: 423 ccataggaagcatggcctcttgctcttaaattcctcttacatgtataggaaactttataa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ccataggaagcatggcctcttgctcttaaattcctcttacatgtataggaaactttataa 410

                                                         
Query: 483 gtatataaaactttagtctgtgatttttgctaccacactccagtga 528
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gtatataaaactttagtctgtgatttttgctaccacactccagtga 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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