Query= MSMg01no104_k19.b1 MSMg01no104_k19.b1 CHROMAT_FILE:
MSMg01no104_k19.b1 PHD_FILE: MSMg01no104_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:01 2005
(249 letters)
>mm_chr14_57059980_57060629
Length = 650
Score = 391 bits (202), Expect = e-113
Identities = 238/250 (95%), Gaps = 4/250 (1%)
Strand = Plus / Minus
Query: 1 gacactagtgcctaagaagctgtggttaaattggtaaaatactagagtggcctggtttct 60
|||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 334 gacactagtgtctaagaagctgtggttaaattggtaaaacactagagtggcatggtttct 275
Query: 61 tataagtaatgtcatgataggtaacccgaagtcattcatac-tcaatgataataatttag 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 274 tataagtaatgtcatgataggtaacccgaagtcattcatacatcaatgataataatttag 215
Query: 120 agggaagacttgtcttttttttatttaaaatttaattctgggtctctgttcaaaagtcta 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 214 agggaagacttgtcttttttttatttaaaatttaattctgggtctctgttcaaaagccca 155
Query: 180 cattttctcaagtatgcactattatcccctttaaaaggcctggttct-ttttt-ttttct 237
|||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||| |
Sbjct: 154 cattttctcaagtatgcactattatcccctttaaaaggtctggttttgtttttgttttgt 95
Query: 238 tttt-ttttt 246
|||| |||||
Sbjct: 94 ttttgttttt 85
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space: 153840
Effective search space used: 153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no104_k19.g1 MSMg01no104_k19.g1 CHROMAT_FILE:
MSMg01no104_k19.g1 PHD_FILE: MSMg01no104_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:01 2005
(599 letters)
>mm_chr14_56920443_56921441
Length = 999
Score = 1114 bits (576), Expect = 0.0
Identities = 594/600 (99%), Gaps = 1/600 (0%)
Strand = Plus / Plus
Query: 1 tcgtgctgaggctcactgaaaataaatgtcatctgggagacacacataagatttatacag 60
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tcgtgctgaggctcgctgaaaataaatatcatctgggagacacacataagatttatacag 260
Query: 61 caatccccttctctggcttgttttccatagtttaagttaacaatggtcaactatggtcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatccccttctctggcttgttttccatagtttaagttaacaatggtcaactatggtcta 320
Query: 121 aagatgcaaatataaaattccataaacaatacatatgacttaatttcattataattgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatgcaaatataaaattccataaacaatacatatgacttaatttcattataattgctc 380
Query: 181 taatttattattagttattgccattgatatctttcaaattatgtttaatagagaatttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatttattattagttattgccattgatatctttcaaattatgtttaatagagaatttca 440
Query: 241 tacatgcatataatgtgttttgaccaaattattcctgagactttccccttccaactctcc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacatgcatataatgtgttttgaccaaattattcctgagactttccccttccaactctct 500
Query: 301 cctttaaaaaaaaaaaa-tcccagagttcgcatgcctatatgcacatggctataggatct 359
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 cctttaaaaaaaaaaaaatcccagagttcgcatgcctatatgcacatgggtataggatct 560
Query: 360 caagggtcacatccctaaaataaatggatcctccctcccccacaaagccatcaattgcca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 caagggtcacatccctaaaataaatggatcctccctcccccacaaagccatcaattgtca 620
Query: 420 atggcttctcaggtagccatgggagttcatgaggtcctcccacttccatgcaggaatttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggcttctcaggtagccatgggagttcatgaggtcctcccacttccatgcaggaatttt 680
Query: 480 ggcagcttgatcgatctggcaccggtcttgtgcattcagtcacagtcactatgagttcat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcagcttgatcgatctggcaccggtcttgtgcattcagtcacagtcactatgagttcat 740
Query: 540 gtgtgcactggccctgtcatgttcaacaaatactgtttcactgaaaatgtctattccctg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgtgcactggccctgtcatgttcaacaaatactgtttcactgaaaatgtctattccctg 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
