BAC Information

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BAC

Clone NameMSMg01-105A08
Chromosome14 (Build37)
Map Location 107,657,344 - 107,657,879
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
Downstream geneLOC668752, EG668754, LOC668757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105A08.T7 (MSMg01no105_a08.b1)MSMg01-105A08.TJ (MSMg01no105_a08.g1)
ACCAG319485AG319486
length707697
length of high quality
(start - end)
539 (43 - 581)459 (74 - 532)
definitionCHROMAT_FILE: MSMg01no105_a08.b1 PHD_FILE: MSMg01no105_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:30 2005CHROMAT_FILE: MSMg01no105_a08.g1 PHD_FILE: MSMg01no105_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTACATGATTCAGTGGGGGTGATGCTGCTGCTTGAAATCTTACGTTC
TACCGGAGTAAGGAAGTCATTGGTGATCATGGCCTCCACATGGTAAGTGG
AGACTGAGGAGAAGTGCTCTCATTACTTCAATGAAGAAGACACATGGGAA
GATTTGAAGTACATCAATAAATAGCACACCTTCAAAATAATTTGGGAACA
CTCTAGGAGACTCCATGAGTCTGTAATTACTAGACCATAACATTTTAATT
AAGGTTCTAATTTGAAAATATGGTTGGCTATTCGCAAGGAGCTCTATGTT
TGCTTATTATAATTTACATTAATTAACCTAAAGTAACATTTAAGATTCCT
CCAGCAAATAAGCCTAATTATCTGGAAGAAAAGAATGCTAAAAATGGGAT
CATAGATTAACATAAAATTATTACAAATCCACTAGTGTGGATTCTTTAGC
CATTAAAGTAAATCATCTTATTTATTACTGAACAGCATTTTTGAGTAAAT
CTTACTTGCTTACAGCAGACGGAAACAGAGGACAAAACTAAAATTGTGCT
TTCCTATACGAATGCATATTTTTCTCAGATGGCTGTAGTCACATTGTATG
TGTAGGAGGTGTAGCTGTGTGAAACGAGTGCATTTTCATGAGTGGGTGGA
CAGAGAC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAAAAGTCCTTAATGTATTTCTTTAT
TTCTTCCCTGACCAATAGATTGCTGAGTAGAGCGTATTTCTGTTTCTATG
AGTGTGTAGGCTCTGGTGTTTCTGTTATTGAAGTCCAGCTATAACTCATG
TTGATTTGATAAAATGAAAGGTATCAATGTTCTCCTATCTGTTGCGGCTT
GCTTTGTGAGCAACTACTTTTTGATTTTGGAGAAGGATTCATGAGGTGCT
GAGAAAAAGGAACATTCCTTTGTGTTTGGGTGAAATATGTTTGGAGCATA
AATGTTTAAAATTGAGATATAATCTTGGTAGATTTTGCTTTGATGAGTAT
GAAGTAGCCTTCCCTGTCTCTTTTGATTAATTTTGGTTGAAAATCTATTT
CATTAGATATTAGAATCCCTATTCCAGCTTACTTCTTGGGTCCATTTGCT
TGGAAAACTTTTTTCTAGCCCTTTACTATGAGATAGTACCTTATTTTTAT
ACTGATAGATGGTATGCTGAGTTGTGTTTCTTGGATGCAGCATAATGATG
GATCCTATATTCTCTTCCATTCTGTTACCCTGTGCCTTTTTATTGCAGAA
TTGAGACCTTTGGTATTGATAGATTTTATTAGGAAGATTTTTAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_a08.b1 MSMg01no105_a08.b1 CHROMAT_FILE:
MSMg01no105_a08.b1 PHD_FILE: MSMg01no105_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:30 2005
         (539 letters)



>mm_chr14_107657141_107658079
          Length = 939

 Score =  998 bits (516), Expect = 0.0
 Identities = 531/536 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattacatgattcagtgggggtgatgctgctgcttgaaatcttacgttctaccg 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattacatgattaagtgggggtgatgctgctgcttgaaatcttacgttctaccg 263

                                                                       
Query: 64  gagtaaggaagtcattggtgatcatggcctccacatggtaagtggagactgaggagaagt 123
           ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 264 gagtaaggaagtcgttggtgatcatggcctccacatggtaagtgaagactgaggagaagt 323

                                                                       
Query: 124 gctctcattacttcaatgaagaagacacatgggaagatttgaagtacatcaataaatagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gctctcattacttcaatgaagaagacacatgggaagatttgaagtacatcaataaatagc 383

                                                                       
Query: 184 acaccttcaaaataatttgggaacactctaggagactccatgagtctgtaattactagac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acaccttcaaaataatttgggaacactctaggagactccatgagtctgtaattactagac 443

                                                                       
Query: 244 cataacattttaattaaggttctaatttgaaaatatggttggctattcgcaaggagctct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cataacattttaattaaggttctaatttgaaaatatggttggctattcgcaaggagctct 503

                                                                       
Query: 304 atgtttgcttattataatttacattaattaacctaaagtaacatttaagattcctccagc 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 504 atgtttgcttattataatttacattaattaacctaaagtaacatttaagattcctctagc 563

                                                                       
Query: 364 aaataagcctaattatctggaagaaaagaatgctaaaaatgggatcatagattaacataa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaataagcctaattatctggaagaaaagaatgctaaaaatgggatcatagattaacataa 623

                                                                       
Query: 424 aattattacaaatccactagtgtggattctttagccattaaagtaaatcatcttatttat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aattattacaaatccactagtgtggattctttagccattaaagtaaatcatcttatttat 683

                                                                   
Query: 484 tactgaacagcatttttgagtaaatcttacttgcttacagcagacggaaacagagg 539
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cactgaacagcatttttgagtaaatcttacttgcttacagcagacggaaacagagg 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)