Query= MSMg01no105_a22.b1 MSMg01no105_a22.b1 CHROMAT_FILE:
MSMg01no105_a22.b1 PHD_FILE: MSMg01no105_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:33 2005
(612 letters)
>mm_chr14_89379810_89380822
Length = 1013
Score = 1162 bits (601), Expect = 0.0
Identities = 607/609 (99%), Gaps = 1/609 (0%)
Strand = Plus / Plus
Query: 5 gaattctattataaagatccatataatatttataccatataatgcatatgtatattgcat 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattataaagatctatataatatttataccatataatgcatatgtatattgcat 264
Query: 65 acatacatgtatatatcatataatatctatagtgtatgatatatattacatacatgtaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatacatgtatatatcatataatatctatagtgtatgatatatattacatacatgtaca 324
Query: 125 taagtgcactgcacacatgcctggttcccacaggaaaccagaaggatgtgtcagaaagat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagtgcactgcacacatgcctggttcccacaggaaaccagaaggatgtgtcagaaagat 384
Query: 185 ctcaatgagttggaatttcaaacaggtggttttgtttgttggtttttgccattggtttgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcaatgagttggaatttcaaacaggtggttttgtttgttggtttttgccattggtttgt 444
Query: 245 ttgctttgttattttaggcttttttttttcttattgcttttatgtttagaactgaaccat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgctttgttattttaggcttttttttttcttattgcttttatgtttagaactgaaccat 504
Query: 305 tgccttcataagcgcagcaagtgagcattctgtccagctctctccagtgttttgttaaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgccttcataagcgcagcaagtgagcattctgtccagctctctccagtgttttgttaaca 564
Query: 365 gtattgcttttaaggtttcgctttttcttgaccacatctagtacgaaattataaacagca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtattgcttttaaggtttcgctttttcttgaccacatctagtacgaaattataaacagca 624
Query: 425 gtgcacacacatgtacttgtgttcccatattttcccctcttaaactcatatgactttgtc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgcacacacatgtacttgtgttcccatattttcccctcttaaactcatatgactttgtc 684
Query: 485 aataacttatgttgcagtccaccataggtttacttcgactaaagagtaaagaggtatcta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aataacttatgttgcagtccaccataggtttacttcgactaaagagtaaagaggtatcta 744
Query: 545 ttaaataaataactaatagacgaccagttaatcaaaaaaaaa-tacatgaagtatatata 603
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 745 ttaaataaataactaatagacgaccagttaatcaaaaaaaaaatacatgaagtatatata 804
Query: 604 gctttgaac 612
|||||||||
Sbjct: 805 gctttgaac 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1013
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1003
Effective search space: 603806
Effective search space used: 603806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_a22.g1 MSMg01no105_a22.g1 CHROMAT_FILE:
MSMg01no105_a22.g1 PHD_FILE: MSMg01no105_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:33 2005
(564 letters)
>mm_chr14_89434398_89435355
Length = 958
Score = 1048 bits (542), Expect = 0.0
Identities = 556/564 (98%), Gaps = 6/564 (1%)
Strand = Plus / Minus
Query: 1 atcagcttgccccaatttaatgtgaaaagaggcatatgtataattttctgtgtttatgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 atcagcttgccccaatttaatgtgaaaagaggcatatgtataattttctgtgtttatgtg 699
Query: 61 agcaaacaaacacaaggtcaaatatttaattaaattgtataatgcacatattttcaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 agcaaacaaacacaaggtcaaatatttaattaaattgtataatgcacatattttcaaaaa 639
Query: 121 tatgaaacttgaagttaaattaaatgaaaactaatttcaaataaatatctgtaactgtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tatgaaacttgaagttaaattaaatgaaaactaatttcaaataaatatctgtaactgtac 579
Query: 181 caaaagaatgtgcttctgaggcacaatgcagttctgaatgctaaacagaaaattaaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 caaaagaatgtgcttctgaggcacaatgcagttctgaatgctaaacagaaaattaaattt 519
Query: 241 ctagttgaaaatattttgagtgactataattaaaatgttactcaacattctattatttat 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 518 ctagttgaaaatattttgagtgactataattaaaatgttactccacattctattatttat 459
Query: 301 ttactattagtatcatcactaattcaataaactattgctaaattttgtgtttgctaatat 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttactattagtatc------aattcaataaactattgctaaattttgtgtttgctaatat 405
Query: 361 aataccaaaataaataagtaaataaagcacaatttagggattatatcaggtagaagcatg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 404 aataccaaaataaataagtaaataaagcacaatttagggattatatcaggtaaaagcatg 345
Query: 421 agtattaacacaaaaactgtccttttcagaagctgaaaataaacaatgtaattgaattaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agtattaacacaaaaactgtccttttcagaagctgaaaataaacaatgtaattgaattaa 285
Query: 481 tctttcacactgaagcagacatgattcataagtaaaataatgttctcactcataggctgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tctttcacactgaagcagacatgattcataagtaaaataatgttctcactcataggctgt 225
Query: 541 tctcaatgctttgaaatttttatt 564
||||||||||||||||||||||||
Sbjct: 224 tctcaatgctttgaaatttttatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 958
Length adjustment: 10
Effective length of query: 554
Effective length of database: 948
Effective search space: 525192
Effective search space used: 525192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
