BAC Information

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BAC

Clone NameMSMg01-105O01
Chromosome14 (Build37)
Map Location 64,030,813 - 64,031,247
singlet/doubletsinglet
Overlap geneBlk
Upstream geneGucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868
Downstream geneLOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105O01.T7 (MSMg01no105_o01.b1)MSMg01-105O01.TJ (MSMg01no105_o01.g1)
ACCAG320116AG320117
length704799
length of high quality
(start - end)
439 (42 - 480)---
definitionCHROMAT_FILE: MSMg01no105_o01.b1 PHD_FILE: MSMg01no105_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:39 2005CHROMAT_FILE: MSMg01no105_o01.g1 PHD_FILE: MSMg01no105_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAATTC
AGTAGTCTCTACCCTGAACCTTGCACTCCAGTGGGGCCAGCTGACCTCTT
ATCTTCATAATCTCCTTACCCTAAACCCTTGCCAAACTTCTGACATTAGA
ACATGACTTTGTCATCTACAGAGTTCATGCTCTAGAACTGTGTAATGGAG
TTACAAAAACATAAATAGTAACCAAACAAACAAATCATAAACCTCACCTC
ATAATGCTTTAATTGCGTGTATGATTTTGTGTTGGGGTTACACTCATAGC
TGGCCACAGGCTGAACATGCCTGCTTTAGAGCACTGATTTCCTCTTAAAC
TCCCATTTGCAGTGAGGTCATGCCCTTGTCCAAAGCCAGGGTGACTACAT
CTGCCCTTCTCAATGACAGTAGCAGGCCATGCACTCAACAGTTTTCATCA
GCACCCATTTGTATCTCAACACCTCATAGTGGACCATCTAGATGGCCCAC
ATCGAGGATGGATCCCAGGGGCATAGCTGGTGCCAGACAGGATCATCATA
CATTCCTGTCCTCTATCAATCTATCTACTATCTATCTATCTATCTATCAT
CTGTCAATCATCCTTCTATTATCTAGCTATTATCTGCCAATTGTCTACAA
ATCTATTCTATCAAATTTCTTTTGAGAGAGCTTTGTCATAACTCCCTTGA
CTGT
ATGCTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXGCTACCCACGCTGCCATGCAGAC
TGCCATGGATATGATCCAGTTCCCAACGAGAATGCTGGGAAGGGAGGCTC
CGGAGGAAACAGAGCATACGACGTCGTGCGAGAGAAGGCGAGTGCCTTTT
TTTTCCTCTCCCCTCCCCCCCCTTTCCTCTTCTCCTTTCCTTTCCCTTGC
CTCTTCTCCCTTTCTTTTTTCTCTTTACTTTCCTTCTTTCCCCCTTCCCC
CCCCCCTTTGCCCTCTCCCTCCTTTCCCCTTTCCCTTCTCCTCCCTCTCT
CGTCGCTTCTTATCGCTCTTTCATCTCTTTTTCACTCAATCCACCCTCTT
ATTTCTTATTCTACGCTTATCTTTCGTCAGTATTAGTGATCTTCGTTCCT
TCCCTCTCTTCTTTTTCTCTCCTCATTCGCGTCCTTCCTGTGTTTTCTCC
CCTTATCTTTCTATCCTCCTCCGCCCCCTCTCGTCTCGCTACTCCTTCTC
CCTTTTCCCCCTCTCCTCTCACCCCTTTTCTTCCTTTCATTCCGTTATTC
TCCTTCCGTGTTGCGGCTGTCCTTCTTCCCTCTTTCTCCCCTCGCCTCCC
TCTACCTCCTTATCCCTAGCTCTATCCACACACCCTCGTCTCCCTCCCTC
CCTTCTTATCTCTTTTCCTTCCCTCCTTTCCTCTTGTCAACCTATTCCCC
TCCCCTTCTACCCCCTTTTCCCTCCCGCCTTACCCTCCCCCCCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_o01.b1 MSMg01no105_o01.b1 CHROMAT_FILE:
MSMg01no105_o01.b1 PHD_FILE: MSMg01no105_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:39 2005
         (439 letters)



>mm_chr14_64030609_64031447
          Length = 839

 Score =  758 bits (392), Expect = 0.0
 Identities = 425/436 (97%), Gaps = 1/436 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcagtagtctctaccctgaaccttgcactccagtggggccagctgacctcttatct 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattcagtagtctctaacctgaaccttgcactccagtggggccagctgaccttttatct 264

                                                                       
Query: 64  tcataatctccttaccctaaacccttgccaaacttctgacattagaacatgactttgtca 123
           ||||| ||||| ||||||||||||||||||||| ||||||||| ||||| ||||||||||
Sbjct: 265 tcatagtctcc-taccctaaacccttgccaaacgtctgacattggaacacgactttgtca 323

                                                                       
Query: 124 tctacagagttcatgctctagaactgtgtaatggagttacaaaaacataaatagtaacca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctacagagttcatgctctagaactgtgtaatggagttacaaaaacataaatagtaacca 383

                                                                       
Query: 184 aacaaacaaatcataaacctcacctcataatgctttaattgcgtgtatgattttgtgttg 243
           |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 aacaaacaaatcgtaaacctcacctcataatgctttaattacgtgtatgattttgtgttg 443

                                                                       
Query: 244 gggttacactcatagctggccacaggctgaacatgcctgctttagagcactgatttcctc 303
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggttgcactcatagctggccacaggctgaacatgcctgctttagagcactgatttcctc 503

                                                                       
Query: 304 ttaaactcccatttgcagtgaggtcatgcccttgtccaaagccagggtgactacatctgc 363
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttaaactcccgtttgcagtgaggtcatgcccttgtccaaagccagggtgactacatctgc 563

                                                                       
Query: 364 ccttctcaatgacagtagcaggccatgcactcaacagttttcatcagcacccatttgtat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccttctcaatgacagtagcaggccatgcactcaacagttttcatcagcacccatttgtat 623

                           
Query: 424 ctcaacacctcatagt 439
           ||||||||||||||||
Sbjct: 624 ctcaacacctcatagt 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)