BAC Information

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BAC

Clone NameMSMg01-106E23
Chromosome14 (Build37)
Map Location 99,794,298 - 99,945,347
singlet/doubletdoublet
Overlap geneLOC668671
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789
Downstream geneLOC668672, EG546623, Klf12, LOC100043413, EG668683
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106E23.T7 (MSMg01no106_e23.b1)MSMg01-106E23.TJ (MSMg01no106_e23.g1)
ACCAG320432AG320433
length7171,323
length of high quality
(start - end)		429 (59 - 487)679 (84 - 762)
definitionCHROMAT_FILE: MSMg01no106_e23.b1 PHD_FILE: MSMg01no106_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:33 2005CHROMAT_FILE: MSMg01no106_e23.g1 PHD_FILE: MSMg01no106_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,944,925 - 99,945,347)(99,794,298 - 99,794,976)
sequence
TATATATATNTATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCATTTTATGCCCGTTTTTGTATGTGGTGAAATA
TGAGGTTTTCATCCTTCTGCAAGTAGATAACTAGTTTCAACAGCATCTTT
CTTAAAAAGGCCACCCTTTCACTATGTGTCCCTTACTCATTTGTGAAAAT
CAGTTGATGGAAAATTTGTAGACTTAGCTTATTCTTAGCTTGATCTATTC
TATTAACAAGAATGTTTTGGAAACTAAACTGAACATTATTTTGGTATAAT
ATCAAAACAATGAGCTAATGACTTCTGAGCTATAGCTAACATTCTCTGCA
ATCAATTTTTCTTAATGATTATTCTTAGTGTAAGTTTAATCTTGAAGACA
GAAAACCCTATCTATTTATAATGCTCAAACAGGAATATGACTTTGAAAAT
CACTGACATGTTCCAGTTATTTACAGCTGTTGTTGCCGTCGCTGCCTGCT
GCTGTTGTTGTCGCCCCCTTTTCCTCTACTCTCCTTCTTCTCCCCCTCCT
ATATTTTTCATCTCCTCTCACTTTTCTTTCTTTCCTTACCTCTCACTTTT
CCCCTTTTCCTCCTCTTTCTCCCCCCCTTCCTCCTTTCTCCCACCTTTCC
TACTACCACCACTATTTAAATATTTTCCCTATCTCCACCTTTCTCCCACC
CGCCCTTATTCCGCCTC

TTTGTTTATGCATGGAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTCTTAACTTGACATGTGAAATTGCTTT
CGCTGTTTTTTTTCCTAAAGTTCCTCTATTTAAACATATCTCCAACACTA
TTTCGTCTAAGATGTCATCTCACTTTCCTGAAGTCTTTTGGGCTATGTGA
CTTTGTACTTCTCAGTCAAGTACGATTGAAAATAAATGATTGTTTTCTAA
TTAGAAATTGGTAGCAGGTGGAGACAGTTCAGTTGGCAAGGTGCTAGCTT
CCCACGTGTGAGGGCCTGAGTCGGGCGTGGGGTGTCCTCCTCTTATCCTC
GGTGATAATGAGGTGGAAAGCAGGGATCCCTGGGAACTTAGGGACATGGA
CTATGTGACAGAGTTCTGTCTCCAGATGAATGATACCCAAGGCTGTCACA
TGATTCCATCACACGTGTTTCCCTTCTCCATGGAAACACTCGTAGATGAA
CGCACGAGCTCCCCTCCCCTAAACAAATTGTACCTGTAGGAGCACATGGT
TTAGCTGGGGATCATGTGAAGTCATATGCTCCTAGTTATTGACCGTGGAG
GAACAGAATGACCACACATAGGAGTGTGCTTTGGTGGGGGTGGGGCAGCA
CGGCAGCTCATCACCACAACACGGAAGAGCTAGAGTGAGCGGATTAATCA
CCAGTTGAACTAGATCTTGGCGGAAGCAAGTGAATTCAGTTAGGTAAAAT
CAGGGTGAGGAAGAAATTACAGTGCGTCGAAGAGAATATAAGGGTGGAGG
GAAAGTCAGAAAACAGGACTGAAGCTAGCACATGGAAGGAACGTCCGGAA
ATCTGGGAAAGATGAATGTTTGCTGCGCAGTTATTGGCTCAGACTCTTGC
TTCCTCTGGAGGAGTTTTTTTGTTTTTTTGGTTTTTTGGTTTTGGCGGGG
GGCCGCCTTCTTCCTACTTACTCTCCTTATCTTATTACTTTCACTTTTTT
CCTCTTTTATTTTTCATCTTCTCTCTTTTTTCTTTTCTTCTTTTCTTTTT
TTTTTGCATTTTATTTTCATTATACATCCTTCTCTATTTTCCTTCTTATC
TTTTCCCTTTTATTCTCTTTTTTTTTTTTATTCTTTTTTCTTCTCTTTCC
CCTTATCCCTCTTCATTTTCTTTTCATTTTCTTTCCTCCTATATATCTTT
TCTCTGCTTCTATTCTTTTATTATTTTATTTTATCTCTCTCTCTTTTTCT
CAGTTATTCTTTCCCTTCCTATTTTTACCCTCTTTTTCTTCTTCCTCTTT
GCTATTCCTTCTTTCCTTTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_e23.b1 MSMg01no106_e23.b1 CHROMAT_FILE:
MSMg01no106_e23.b1 PHD_FILE: MSMg01no106_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:33 2005
         (429 letters)



>mm_chr14_99944529_99945357
          Length = 829

 Score =  787 bits (407), Expect = 0.0
 Identities = 419/423 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattttatgcccgtttttgtatgtggtgaaatatgaggttttcatccttctgcaa 64
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 gaattcattttatgtaggtttttgtatgtggtgaaatatgaggttttcatccttctgcaa 760

                                                                       
Query: 65  gtagataactagtttcaacagcatctttcttaaaaaggccaccctttcactatgtgtccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gtagataactagtttcaacagcatctttcttaaaaaggccaccctttcactatgtgtccc 700

                                                                       
Query: 125 ttactcatttgtgaaaatcagttgatggaaaatttgtagacttagcttattcttagcttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttactcatttgtgaaaatcagttgatggaaaatttgtagacttagcttattcttagcttg 640

                                                                       
Query: 185 atctattctattaacaagaatgttttggaaactaaactgaacattattttggtataatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 atctattctattaacaagaatgttttggaaactaaactgaacattattttggtataatat 580

                                                                       
Query: 245 caaaacaatgagctaatgacttctgagctatagctaacattctctgcaatcaatttttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 caaaacaatgagctaatgacttctgagctatagctaacattctctgcaatcaatttttct 520

                                                                       
Query: 305 taatgattattcttagtgtaagtttaatcttgaagacagaaaaccctatctatttataat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 taatgattattcttagtgtaagtttaatcttgaagacagaaaaccctatctatttataat 460

                                                                       
Query: 365 gctcaaacaggaatatgactttgaaaatcactgacatgttccagttatttacagctgttg 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 459 gctcaaacaggaatatgactttgaaaatcactgacatgttccagttatttacagttgttg 400

              
Query: 425 ttg 427
           |||
Sbjct: 399 ttg 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no106_e23.g1 MSMg01no106_e23.g1 CHROMAT_FILE:
MSMg01no106_e23.g1 PHD_FILE: MSMg01no106_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:33 2005
         (679 letters)



>mm_chr14_99794098_99795176
          Length = 1079

 Score = 1305 bits (675), Expect = 0.0
 Identities = 678/679 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgtgaaattgctttcgctgttttttttcctaaagttcctctatttaaacatatctcc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 acatgtgaaattgctttcgctgttttttttcttaaagttcctctatttaaacatatctcc 260

                                                                       
Query: 61  aacactatttcgtctaagatgtcatctcactttcctgaagtcttttgggctatgtgactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacactatttcgtctaagatgtcatctcactttcctgaagtcttttgggctatgtgactt 320

                                                                       
Query: 121 tgtacttctcagtcaagtacgattgaaaataaatgattgttttctaattagaaattggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtacttctcagtcaagtacgattgaaaataaatgattgttttctaattagaaattggta 380

                                                                       
Query: 181 gcaggtggagacagttcagttggcaaggtgctagcttcccacgtgtgagggcctgagtcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggtggagacagttcagttggcaaggtgctagcttcccacgtgtgagggcctgagtcg 440

                                                                       
Query: 241 ggcgtggggtgtcctcctcttatcctcggtgataatgaggtggaaagcagggatccctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcgtggggtgtcctcctcttatcctcggtgataatgaggtggaaagcagggatccctgg 500

                                                                       
Query: 301 gaacttagggacatggactatgtgacagagttctgtctccagatgaatgatacccaaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaacttagggacatggactatgtgacagagttctgtctccagatgaatgatacccaaggc 560

                                                                       
Query: 361 tgtcacatgattccatcacacgtgtttcccttctccatggaaacactcgtagatgaacgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtcacatgattccatcacacgtgtttcccttctccatggaaacactcgtagatgaacgc 620

                                                                       
Query: 421 acgagctcccctcccctaaacaaattgtacctgtaggagcacatggtttagctggggatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acgagctcccctcccctaaacaaattgtacctgtaggagcacatggtttagctggggatc 680

                                                                       
Query: 481 atgtgaagtcatatgctcctagttattgaccgtggaggaacagaatgaccacacatagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgtgaagtcatatgctcctagttattgaccgtggaggaacagaatgaccacacatagga 740

                                                                       
Query: 541 gtgtgctttggtgggggtggggcagcacggcagctcatcaccacaacacggaagagctag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgtgctttggtgggggtggggcagcacggcagctcatcaccacaacacggaagagctag 800

                                                                       
Query: 601 agtgagcggattaatcaccagttgaactagatcttggcggaagcaagtgaattcagttag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agtgagcggattaatcaccagttgaactagatcttggcggaagcaagtgaattcagttag 860

                              
Query: 661 gtaaaatcagggtgaggaa 679
           |||||||||||||||||||
Sbjct: 861 gtaaaatcagggtgaggaa 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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