Query= MSMg01no106_k05.b1 MSMg01no106_k05.b1 CHROMAT_FILE:
MSMg01no106_k05.b1 PHD_FILE: MSMg01no106_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:22 2005
(259 letters)
>mm_chr14_21968510_21969168
Length = 659
Score = 400 bits (207), Expect = e-116
Identities = 227/235 (96%), Gaps = 5/235 (2%)
Strand = Plus / Minus
Query: 1 tactctagttacacttcccgtctcttgggtctatgaatcctaaacgcatgcaaaatatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tactctagttacacttcccgtctcttgggtctatgaatcctaaacgcatgcaaaatatta 359
Query: 61 tgctaagaaagaacgaagtgattttccagatggttacaggaagacatggattttcaggca 120
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 358 tgctaagaaagaacgaggtgattttccagatggttacaggaagacatggattttcaggta 299
Query: 121 tattatgacatcatgtacttcatcttccccatctccaaatgagaattctttatgccccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tattatgacatcatgtacttcatcttccccatctccaaatgagaattctttatgccccac 239
Query: 181 catgggtacactgtgcctgcttcttttggtgaagacat-g--agctcagttcccc 232
||||||||||||||||||||||||||||| |||||||| | |||||| |||||
Sbjct: 238 catgggtacactgtgcctgcttcttttggagaagacataggcagctca--tcccc 186
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space: 162500
Effective search space used: 162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no106_k05.g1 MSMg01no106_k05.g1 CHROMAT_FILE:
MSMg01no106_k05.g1 PHD_FILE: MSMg01no106_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:22 2005
(557 letters)
>mm_chr14_21832914_21833871
Length = 958
Score = 1011 bits (523), Expect = 0.0
Identities = 550/559 (98%), Gaps = 3/559 (0%)
Strand = Plus / Plus
Query: 1 cttctgcctcccaagagctgggattaatggcatgtgtcaaccaccactgcctggctagga 60
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 201 cttctgcctcccaagagctgggattaatggcatgtgtcaaccaacactgcttggctagga 260
Query: 61 agctgaatcaaaacaaaagatcagaatgagtcaagggacctcaggtggtggatgtagaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgaatcaaaacaaaagatcagaatgagtcaagggacctcaggtggtggatgtagaac 320
Query: 121 attggaacgagagtggagcttgctatcaaactacaaaacctttacagattgtctgacttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attggaacgagagtggagcttgctatcaaactacaaaacctttacagattgtctgacttg 380
Query: 181 agtcagagttagacaccaagtatggaagtggcactctcaattatcgtcagtaggacattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcagagttagacaccaagtatggaagtggcactctcaattatcgtcagtaggacattt 440
Query: 241 aaaaaaaaa-ggaagtattctgctaggctcctggcaggctctgtatgtagcataaaactg 299
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 aaaaaaaaaaggaagtattctgctaggctcctggcaggctctatatgtagcataaaactg 500
Query: 300 acccagtgctgtctggtagaccttgttttccagatactgatcctaatgtcactcaaacaa 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acccagtgctgtctggtagacgttgttttccagatactgatcctaatgtcactcaaacaa 560
Query: 360 atagaaacttttttgtcatttgtaagttagtttttttttttttttaa-ttagagtctcta 418
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 561 atagaaacttttttgtcatttgtaagttagttttttttttttttaaaattagagtctcta 620
Query: 419 atgatatccctgagggaaagaaaagttaactttttaaacgagagaaccattttgcattta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgatatccctgagggaaagaaaagttaactttttaaacgagagaaccattttgcattta 680
Query: 479 gaactaataaaaatcacctatccttgcctctgtgttctgtctggaatgagcacaagctat 538
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 gaactaataaaaatcacctatccttgcctctgtgttctgtctggtatgagcacaagctat 740
Query: 539 cgttttttcccattgaggt 557
||||||| |||||||||||
Sbjct: 741 cgttttt-cccattgaggt 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space: 518556
Effective search space used: 518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
