BAC Information

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BAC

Clone NameMSMg01-106N12
Chromosome14 (Build37)
Map Location 90,355,362 - 90,355,693
singlet/doubletsinglet
Overlap genenone
Upstream geneEG328451
Downstream geneLOC100043336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106N12.T7 (MSMg01no106_n12.b1)MSMg01-106N12.TJ (MSMg01no106_n12.g1)
ACCAG320819AG320820
length1,2861,277
length of high quality
(start - end)
336 (133 - 468)272 (135 - 406)
definitionCHROMAT_FILE: MSMg01no106_n12.b1 PHD_FILE: MSMg01no106_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:51 2005CHROMAT_FILE: MSMg01no106_n12.g1 PHD_FILE: MSMg01no106_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:51 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCCAATCATTTTNNATACACTGCGCGCTATAGACTACTAAGGGAGAGGA
TCCGCGGAATTCTGAGTGTTAAATCCAACCTATAAACTGCTTATAATTTA
CAATGTTGGTTATCTCTGCCTTTAAAATTTATATATTTAGCACATAAATG
TATTTCAACATCTTTTAATTATTCTTTCTTTCCTTCACAATTTGTGTGCC
CTCTCTATTGTAACGTATGTCACACTCAACACATTAGAATGACTCTTTAA
TCAACAGTAAAACAAGGAACCTACTAAAGATAAATTTGTTCTCCTAAAGT
CACTGTAATTTTATTATCAGAGAAGCAATCCTTTCCTATTGAAAAAGTTA
ATTGAAATTTAGGAACCATTAGAAAATGTTAAGTCTTGAAATGTTTCTTC
AGAGAGTATGTTTTTTTTCAAAATTGCAATTATGCTACACATTTGCCTGC
GTCATCCTACAATCTTCTCTGGCAAATTAGTTTTCTTAAAGTTGTTAATT
AACAATGGTGCTTGAAATTGTCTTAATGGCATTGTTGAGTGTTGTTTTCA
ATTATAATAGTACAGTGGAAAGATCTATTGCTTCATAAGACTCATGTGCA
ACCTTCCATCACGCTGTTTATTATGACAGTGCTAAAAGTCTCAAGTTAGA
ATGTAAATTCCATTGTACCATCAAAATTTGCCTTTCAATTTTTTTCTTCA
CCAGTTACTGAGAGAACATCATAGCCTTTGTCTATGGTTACTTCTTCTGT
TTTATTTATGTGAACTACGGTAGGGAAATGGAATATGAATTATTATTCTA
CGAAATAATCTTCAAACAATTATGTTGAAAACAATAATTTCATATAAACC
TCCTAAGTTTAATCTAATAATTTGGTATTTAATTTTATTAAAACTAAACA
TTTCCTTAACATTCCTTTTGCATTTCTTTCCCTATGTATGGTCATTTTAT
AAACTAATATGCTTTTCAGGGAAAAAAAATTAATTTTTCTATTATGGTGC
CTGCTTCAAAATTTTCTCCTAATAATGGTTTTTAAAAATGGCCCTTTTCC
CTATAATATCACATAATGTCATAATTTTTTTGGTGCCCCTGGGAATTTAT
TATAACCCATGTTTGTCTTATTTAAATCGTTACTTATATTTAACTAGTAA
ACATATTATCTTATCTATACCTCGGTTGTTATATTTTTCTGCTATTTCGT
TCTTACATCTTATACTTTATATTACTTATTTNTACAATACTACTTTATGG
TATATATACACATATAATGATCCTTTTTACATCGTT
CATTTCATTNTTATTCATGTGAGCCGTGGGCGCCGGTXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTCTTAAGGGCCCCCACATGGTC
CTGTGCTTTCTTTTTGGCCCCTAGACTTTTAATAACTGCTTTTATTTAAG
TAAGGGTTATGGACTCTTTAGATGGTTTATCTAGTCCTGATTTAACTTTG
GTATCAAAAAGTTATTCATTTCATCCTGATTTTCCAGTTTTGCTAAGTAT
AGTCTTTTATATTAGGATATGTTGACTTTTTAAATTCCTTTGGTTTTTGA
TGTTATATCTCCTTTTTCATTCTTATTTTGTTAATTTGGATACTGTCTTC
ATGCCTTCTGGTTAGTCTGGCTAAGGATTTATCTATCTTGTTGATTTTCT
CAAAGTATTTTCTCCTCCTAGCCTTGGTGATGTCTTGTATAGTTCATTTT
GTTTCTCCGTGGTTGATTTCAGCTCTGATGTTGATTCTTTCCTGCCCTCT
AAGCTTCCTAGGTACATTTGCTCCTTTTTGTTCTAGAGTTTTCAGATGTG
CTGTCTAGCTGCTAGTGTATCCTCTCTATAGTTTTCTTTTTGTACTCACT
CAGATCTACGAGTTTTCCTCTTTATCACCTGCTTTCATTCTGCCCTATTT
TTTTGATTATCTTTGCGCCTCCCTTTTCATTATTTTCTAAAACAGTCTTT
AATCTCTCTTCCATTTTTCTTCCTCACCTATCTTTCTTTACTTTCACTTT
ATTTCTTTTTCCTTGTTTCTTTTGGCTTCTCCATCGATTTCCTTTTTTTT
TTTCTGTTGCATTTTACTTTATATCCACCCTTTATCTATTGTTTTTTCTT
TATGTATTTCTTGTTACTTTTTTTTTATTTTTTTTTCCTCTCGTCGTTTT
CTCCCTTTTCTTAACTTTTTTACTCTTTTCTTTTTTTCTTTTATTACCTT
TCTTTGTTCTTCACTCTCACCTTTCTTTTCTCTTTCTTCATTTTCTCCCT
CTTTCCTCTTACTTATTTCTTTTATAATCCCTATTTACCATCCTTACCTT
CTTTGATTTCTTCCTCTCTCTTCCCTTCTTTATTTTCTTGCTCTTTCTCC
CTATATTCTATCCTTCTTTCTCACATCTCGCGTACTTTTCCACACTTTTC
CCATATTTATTCTCTCTACCTTGTTTTTATCCTCACTATTCTCCTCTCTT
CTCTTACTATTCTTTCCTTTCATTCCCTTGTCAGAATATCCAATTATTAT
TCTATATACCTCTGTCTATTCCTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_n12.b1 MSMg01no106_n12.b1 CHROMAT_FILE:
MSMg01no106_n12.b1 PHD_FILE: MSMg01no106_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:51 2005
         (336 letters)



>mm_chr14_90355162_90355897
          Length = 736

 Score =  611 bits (316), Expect = e-179
 Identities = 328/332 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatttagcacataaatgtatttcaacatcttttaattattctttctttccttcacaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 atatttagcacataaatgtatttcaacatcttttaattattctttctttccttcacaatt 473

                                                                       
Query: 61  tgtgtgccctctctattgtaacgtatgtcacactcaacacattagaatgactctttaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tgtgtgccctctctattgtaacgtatgtcacactcaacacattagaatgactctttaatc 413

                                                                       
Query: 121 aacagtaaaacaaggaacctactaaagataaatttgttctcctaaagtcactgtaatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aacagtaaaacaaggaacctactaaagataaatttgttctcctaaagtcactgtaatttt 353

                                                                       
Query: 181 attatcagagaagcaatcctttcctattgaaaaagttaattgaaatttaggaaccattag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 attatcagagaagcaatcctttcctattgaaaaagttaattgaaatttaggaaccattag 293

                                                                       
Query: 241 aaaatgttaagtcttgaaatgtttcttcagagagtatgttttttttcaaaattgcaatta 300
           ||||||||||||||||||||||||||||||||||||||  |  |||||||||||||||||
Sbjct: 292 aaaatgttaagtcttgaaatgtttcttcagagagtatgcatcctttcaaaattgcaatta 233

                                           
Query: 301 tgctacacatttgcctgcgtcatcctacaatc 332
           ||||||||||||||||||||||||||||||||
Sbjct: 232 tgctacacatttgcctgcgtcatcctacaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)