BAC Information

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BAC

Clone NameMSMg01-108F12
Chromosome14 (Build37)
Map Location 108,236,610 - 108,236,947
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754
Downstream geneLOC668757, EG668761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108F12.T7 (MSMg01no108_f12.b1)MSMg01-108F12.TJ (MSMg01no108_f12.g1)
ACCAG321815AG321816
length715703
length of high quality
(start - end)
366 (41 - 406)338 (85 - 422)
definitionCHROMAT_FILE: MSMg01no108_f12.b1 PHD_FILE: MSMg01no108_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:10 2005CHROMAT_FILE: MSMg01no108_f12.g1 PHD_FILE: MSMg01no108_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTTCAGTCCTTAGCTATTTCCAGTAAAGATCCTATGAATATAGTGGAGT
ATGTGTCCCTGTGGTATGGTAGAGCCCAAGTGCAATACAGCTGGGTCATT
AGGCTTCTATGAACATAGTGGAGCATATGCTGCTGTGGTATGGTGGCTCA
TCTTTTGGGTACATAACCCAAACTAACTATACATCTTAATCTTCTATTAC
AACTGGGTCTTTAGGTAAAACAATTCCAAAATTTCCCGAGAAAACTCAAA
ATTGATTTCCAGAGTGATTAAGTTTGTACTCTCACAAACAGTGGAGGAAT
GTCACCCTTGCTCCATATCCTGGTCATCATGTGCTGCTGCTTGGATTTTT
GACTTAGCCATTCAGATGGGTAAAAGATAAAATCTCAGGTGATTACTTTT
TTCTCTCTCTGAAGGGGAATTGAAGCATTCTCACTCTGTCCCTTCTGTTT
ACTAATCTTCTTGAGTTCTGTGTATTTTATTCTAGGTATTCTGTACTTTT
TTGGCTAACATGCTCTTACTAGTGAGTACATGCTATGCATGTCCTTTTGG
ATCTGAGTTATGCCCCTCAGGAAAATTTCTATTTCCATCCATTTGGCTTG
CAAAACTCATGACACCCTCATTCCTAACAACTGAATAGTATTCCCCTCTC
CTAATAAGCTGCATT
TGTGCCANNCCACTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCCTTTTTTCTTC
TTGCACTATGACTAAAGTCATGTGATTAGAACAATATTTTCCCTTGACTT
ACAATTGGTTGCCAATACATCTCTGACACAGAATCCCCAGGAGAATGCGC
ACACAATGGTTGTACAAGCTTAGATCATTTCTTTGCTTTACTTAGTATGC
CTCTGCTTCCTTTCTCTCTTCCAGCAATTATGGAAAGTTTCCTTTTCAGC
TTTTATTTGCATTATTGAAATGATATATAAGTATCATATTTATTTTCCAG
CCAAGGAGAATGGTAGCTAGCTATTAATTTGTGTATATATGCCAGTGGAG
GATTGGGGTGGGGTAGGGGGACGGCCATTTCCCTCCCCTCTTATTATTTC
CTCCGATCTTTTTTCCTTTCCTTCTTCCGTTTACTTCTCCCTTACCTCTT
GCCCGTACCCTTCTTCTCCTCCTCCTCTCTTCTTCCTTATCCCCTCCCTT
CTTCTTACTCTATCTTCCTCTTTTCCTCCTTCCTTTCTGCCTTACTTCCC
TTCTCACCTCCTTTCCCCCTTTTCCCCTCTTCTTTCCATCTTCTTCCTTT
TCCTCCTATTTTCCTCCCCTTCCTCCCCTCTCCTCCTTCTCCCCTCCTCT
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_f12.g1 MSMg01no108_f12.g1 CHROMAT_FILE:
MSMg01no108_f12.g1 PHD_FILE: MSMg01no108_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:10 2005
         (338 letters)



>mm_chr14_108236410_108237147
          Length = 738

 Score =  654 bits (338), Expect = 0.0
 Identities = 338/338 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgccttttttcttcttgcactatgactaaagtcatgtgattagaacaatattttccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 attgccttttttcttcttgcactatgactaaagtcatgtgattagaacaatattttccct 479

                                                                       
Query: 61  tgacttacaattggttgccaatacatctctgacacagaatccccaggagaatgcgcacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgacttacaattggttgccaatacatctctgacacagaatccccaggagaatgcgcacac 419

                                                                       
Query: 121 aatggttgtacaagcttagatcatttctttgctttacttagtatgcctctgcttcctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aatggttgtacaagcttagatcatttctttgctttacttagtatgcctctgcttcctttc 359

                                                                       
Query: 181 tctcttccagcaattatggaaagtttccttttcagcttttatttgcattattgaaatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tctcttccagcaattatggaaagtttccttttcagcttttatttgcattattgaaatgat 299

                                                                       
Query: 241 atataagtatcatatttattttccagccaaggagaatggtagctagctattaatttgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atataagtatcatatttattttccagccaaggagaatggtagctagctattaatttgtgt 239

                                                 
Query: 301 atatatgccagtggaggattggggtggggtagggggac 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atatatgccagtggaggattggggtggggtagggggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)