BAC Information

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BAC

Clone NameMSMg01-108H04
Chromosome14 (Build37)
Map Location 111,849,744 - 111,849,926
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108H04.T7 (MSMg01no108_h04.b1)MSMg01-108H04.TJ (MSMg01no108_h04.g1)
ACCAG321895AG321896
length723704
length of high quality
(start - end)
183 (117 - 299)474 (80 - 553)
definitionCHROMAT_FILE: MSMg01no108_h04.b1 PHD_FILE: MSMg01no108_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:19 2005CHROMAT_FILE: MSMg01no108_h04.g1 PHD_FILE: MSMg01no108_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ACGAAAATTACCTCAACCTATAAAGCCTTTGTATACAATCTCTTGCCAGA
TAGTCCATGTTGTTAGATTAAAATTCCTCTGCAAAATTGATAGGGAATAT
ACATCTATGGTAAAAAAAAATAAAACACCCAAGAGCATAAGTAAAGTATT
TAATGATAGAAATATTGTATCTGTTGTATCGCTCATTTCTGTTCCTTTGT
GTGATCTCATTCTTTATTTCTCTTTTTAATTTATTGTGCACCAAGATTCT
GTACATCGCTTTAGAGTTCTTGATTCTTTGAATTGCTCTGTTTTTTTTTT
AAGTGAATCAATATCTATTCTTTCTTCTATTTCTTTCTGCTTACTGCATT
TCTGTTGACTGCGCTCATGTTTTTACAATTTTTGATTTAAGCATTTAGTT
TTACAAGCTCTGAGAGAAGAAATCACAAATGCTACTAACAAAATTAATCA
CTTCCACCTTAGAAGCTATGGCGAAATTTGCACAGAAATGCATAATTATA
TTAAAAATTTCCGCCCCACAGCAACCAACTATGTCTCTAATCCCTCATGT
CATTATTTGAAGTGTGTCATACGAACTCCCCTTATTATTGTTATCCATTG
CCGGTACACCCATATAAAGTTGCTGATCTCCTTTCTGCTAAAAAATCATT
TTCATAAAACACCCCCTTTTTGG
ATTTTCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTTTGTTTTAAT
AGGGTTATTTGGTTCTCTGGAGTCTAACTTCTTGAGTTCTTTGCATATAT
TGGATATTAGCCATATATCAAGTGTAGGGTTGGTAAAGATCTTTCCCCAT
TCTGTAGGTGGCTGTTTTGTCCTATTGAAAATGTCCTTTGACTTCCAGAA
GCTTTTCAATTTTGTGAGGTCCCATTTGTCAATTCTTTATCTTAGAACAG
GAACTATTGGTGTTCTGTTTATGAAGTTTTCCCTTGTGCTGATGTGTTAG
AGGCTCTTCCCTATATTCTCTTCTATTAGTTTCATTGCATCTAGTTTTAT
GTGGAGGTTCTTGATCCACTTGGAATTAAGCTTTGTGCAAGGAGGTAAGA
AAGGTTCAGTTTGCAGTCTTCTACACGCTGACCACTAGTTGAACCATAAC
CATTTGTTGAAAATGCTTTTTTTCCACAGGATGGTTTTATTTCCTTTGTC
ACATATGATGTAACCATATGAGTGTGGTTTCATTTCTGGGTCTCCAATTC
TGTTCCACTGATCTATCTTCCTGTTTCTGTACCAATACCATGCAATTTTG
ATCACTATTGCTCTGTAATACAGCTTGAGGTCAGGGATGGTGACTCCTCC
TTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_h04.b1 MSMg01no108_h04.b1 CHROMAT_FILE:
MSMg01no108_h04.b1 PHD_FILE: MSMg01no108_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:19 2005
         (183 letters)



>mm_chr14_111849544_111850126
          Length = 583

 Score =  331 bits (171), Expect = 2e-95
 Identities = 180/183 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaaattcctctgcaaaattgatagggaatatacatctatggtaaaaaaaaataaaac 60
           |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 383 attaaaattcctctgcaaaattgataagtaatatacatctatggtaaaaaaaaataaaac 324

                                                                       
Query: 61  acccaagagcataagtaaagtatttaatgatagaaatattgtatctgttgtatcgctcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acccaagagcataagtaaagtatttaatgatagaaatattgtatctgttgtatcgctcat 264

                                                                       
Query: 121 ttctgttcctttgtgtgatctcattctttatttctctttttaatttattgtgcaccaaga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 ttctgttcctttgtgtgatctcattctttatttctctttttaatttattgtggaccaaga 204

              
Query: 181 ttc 183
           |||
Sbjct: 203 ttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)