BAC Information

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BAC

Clone NameMSMg01-108K12
Chromosome14 (Build37)
Map Location 31,809,633 - 31,810,115
singlet/doubletsinglet
Overlap genenone
Upstream geneIl17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4
Downstream geneSpcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108K12.T7 (MSMg01no108_k12.b1)MSMg01-108K12.TJ (MSMg01no108_k12.g1)
ACCAG322046AG322047
length705708
length of high quality
(start - end)		663 (41 - 703)638 (71 - 708)
definitionCHROMAT_FILE: MSMg01no108_k12.b1 PHD_FILE: MSMg01no108_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:35 2005CHROMAT_FILE: MSMg01no108_k12.g1 PHD_FILE: MSMg01no108_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGCATGTGTGCCGTGGGTCCGACTCAAGAGAGAGGTGCATGTGCTGCAGC
TGGGGAGGCATGGCTGCCTAGACTCCTTAGCACCCAGGTGATTCATAGAC
GCTCAACATGTAGCTCCAGGACCTGGCGTTTCCCCTTCTGAGTTTCATTC
AGTCTTGCTTCGGCCCAGTCATTCCCATTACCCCATTCTCCCCCCTTTAA
AATGGGGGTGTTTACTTGTGTACCAGCAAACACTAGAAGCATGTGGCTCG
CTTTTTATTTTTATAGGAGTTCACAGTTAAGAGACTGCCTTGAGTCTCTG
AAAAGACTTTGGACTTGTAAATTGTGTTACTACAAAAAGACTGCGGGGAC
TTTTTCAAGTTATGCTGAATGCATTTTGCATTGAGATGTCCATGAGCCTA
TGAGAACAAAGGAGTAGAGGGTATATGTGAAAAGTGATATGTTCCAGTGC
CAGACTGACAGGGATAAACTTGTGACAATTACTTCTGATTATGGATCTAG
AATCACTGAAGAGACAAGCCTCTAGGAATACCTGTGATGTAATATCTAGA
TTAGGTTAACCTCTGGGCATGCCTATAGGGATTATCTATATTAGGTTAAT
CTGATCAGGAAGTCCCTCTTTAAATTGGGTGGCACTGTTTCAGGAGCTGG
GCTTC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGGATTTGCTTCCCAAGCACTGGGATTAA
AAGTGTGCACCATTAGTGGTTTGGTTTTGTTGAATGGAAGAACTTTTTTT
AAAGCTAGTAAGATAATTTGTAATATATTTATACCAATAAATTAGAAACT
AAAGTAAAGCCTTCTGGTCTACTTATCTACTCAGGCCAGATCAGTGGGCC
TGATATCCTCCCACACCCTACATGGTGGCCCAGGAGGTCTGCAGTAACCA
GGGACACAGCCTGTCTGCCTCCCAGGAGGTCCACAGTAACTAGGGACACA
GGAAGTTCACAGTAACCAGAGGCCCAGGAGGCCTGCTCTAACCAGAGATG
AAGGAGGCCCACCCTAACCAGAAACAGCACTGCCTGTCTCCCAGGAGACC
AGCTCTAACCCAGGTCACAGAGCTCTACCTGCCTCCAAGGAGGTCTGCTT
CAGTCAGAGATACCCAGGGCAGTTAACACCAGATGGTGAGAGGCAAGTGC
AAGGATATTAAGTGACAGCATCATCAGAACCCAGTTCTCCCACCACAGCA
AGCTCTTGATACCCTAACATGCCTGAAAAGCAACATAATGACCTAAAATC
CCATCTCATAAAGATAATAGAGGCCTTTAAGGAGGATATAAATACAGAAA
AGCATAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_k12.g1 MSMg01no108_k12.g1 CHROMAT_FILE:
MSMg01no108_k12.g1 PHD_FILE: MSMg01no108_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:35 2005
         (638 letters)



>mm_chr14_31809633_31810670
          Length = 1038

 Score =  926 bits (479), Expect = 0.0
 Identities = 482/483 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggatttgcttcccaagcactgggattaaaagtgtgcaccattagtggtttggttttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctggatttgcttcccaagcactgggattaaaagtgtgcaccattagtggtttggttttgt 424

                                                                       
Query: 61  tgaatggaagaactttttttaaagctagtaagataatttgtaatatatttataccaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgaatggaagaactttttttaaagctagtaagataatttgtaatatatttataccaataa 364

                                                                       
Query: 121 attagaaactaaagtaaagccttctggtctacttatctactcaggccagatcagtgggcc 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 363 attagaaactaaagtaaagccttctggtctacttatccactcaggccagatcagtgggcc 304

                                                                       
Query: 181 tgatatcctcccacaccctacatggtggcccaggaggtctgcagtaaccagggacacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgatatcctcccacaccctacatggtggcccaggaggtctgcagtaaccagggacacagc 244

                                                                       
Query: 241 ctgtctgcctcccaggaggtccacagtaactagggacacaggaagttcacagtaaccaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctgtctgcctcccaggaggtccacagtaactagggacacaggaagttcacagtaaccaga 184

                                                                       
Query: 301 ggcccaggaggcctgctctaaccagagatgaaggaggcccaccctaaccagaaacagcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ggcccaggaggcctgctctaaccagagatgaaggaggcccaccctaaccagaaacagcac 124

                                                                       
Query: 361 tgcctgtctcccaggagaccagctctaacccaggtcacagagctctacctgcctccaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tgcctgtctcccaggagaccagctctaacccaggtcacagagctctacctgcctccaagg 64

                                                                       
Query: 421 aggtctgcttcagtcagagatacccagggcagttaacaccagatggtgagaggcaagtgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  aggtctgcttcagtcagagatacccagggcagttaacaccagatggtgagaggcaagtgc 4

              
Query: 481 aag 483
           |||
Sbjct: 3   aag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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