BAC Information

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BAC

Clone NameMSMg01-109K18
Chromosome14 (Build37)
Map Location 26,039,289 - 26,039,429
singlet/doubletsinglet
Overlap genenone
Upstream geneDlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315, LOC100039411
Downstream geneZmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109K18.T7 (MSMg01no109_k18.b1)MSMg01-109K18.TJ (MSMg01no109_k18.g1)
ACCAG322798AG322799
length703715
length of high quality
(start - end)
206 (105 - 310)143 (76 - 218)
definitionCHROMAT_FILE: MSMg01no109_k18.b1 PHD_FILE: MSMg01no109_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:59 2005CHROMAT_FILE: MSMg01no109_k18.g1 PHD_FILE: MSMg01no109_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCCCCTTCCCCTTTTTTTATCTATATTTGCGGCGCTAATACGACTAC
TTTCAAAGAGGACCGCGGAATTCAGGTTCCGCTTGAAGGAGAAACCATGG
GGCGGGGGGGGGGGTTCTGCTTACTGTTGTGCTTCTCTAATTTGTTCAGC
TGGCCTTCTAATACATCCCAGACTCAACTTCCTAAGGATGGTACTGCCCA
TGGTGGGCTGAGCCCTTCTGTATCAATTATAAATCAAGACACCCCCACAG
ACGTGCCCACAGGCCATGCTGATCTAGACATTTCTTCCTTTGAGTTTCCC
TCTTACAAGGGGGTAGACTTGTGACTAGTTGTTTTTCAAAACTATAAGTC
TTTGCACATCCCTTTCCCCATTCCACACTAGATATGTAGGGTGCACATCA
CACAGGTACAGTATTCTGGCACAGGCCCCTCAGCCAAAAAGCAGGAAGCC
AGAGAAAGGAGAATTTTTTGGCAAGTGCACATAAACTATATATTCCATAA
ACTTAATAACCAATTGCGTGTGTGTGTGTGTGTGTGTGTGCGCGAGTGTG
TGTCCCCCTTTTCTTCTCATTATACCATTTACTCGGATAACCTCTTTTCT
TTTTATTCCTCTTTTTTATACCTACCATAACGTCCCTCATAGCTACCTTC
TATGTTCTTACCCTTAGCTATTTTTTTTTTTTGAAATCCGCATCCCCTCT
TTN
NCCCCCCGATGCAGTGNGAGGCCTGGCGGCCGCCTTTTTCAAAACGGGGG
TGAACTATAGAATTTTCAAAAAAATTCACTATTTATTCATGTCTTGAGTT
TGCAGTATTCCTTCCCATGTCTCAGAGTTCATAGACTCTGTGGTGCCAAT
GTGGAGAACACCTTGCTTGCTGGCTATGCAGCTATAAATCCTGTGGGAAG
CTGGCAACCTCCATCATCAGTGGTGAGAAGAGGCGACATGTTACCACCCC
AAGAGAACGACTGGGGGGTGTCTAGGATTTGGAGGGCAAGGATTCCAAGA
AGAGACAGGTTTTTGCCTTTATTGTTTATATAAGTACTTGTGCAGGGATC
GCTATCATTCGAGTATTAAGCCAGGCTTCTCCTTTAATCTTCTCAGAGGC
CGGGAGGCCGAGGCAGGAGGGTTCCTTGTATTGTTGACTGGTCTAGTCTG
ATCCCTACGACCCCAGTCAGTGAGCGACCCTGTCTCCCATAAGAGAGTGA
CTAATGAATACACTCAACATTGACCCACAGCTTCTGAACACTCATGTTTG
CAAACTTCCAAATATGTGACTGTGTGCCCATGTATTACAACGCGTCGAAT
GATCCCCCCCAAGTCGCCTCATGATGTATCACTGTAGTTGCCATGTTAAA
TGTCATATGTTTTGCCTACTGTGTTTTAACACGCTCTCCTGGTATTATGC
AAACCATAAACGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_k18.g1 MSMg01no109_k18.g1 CHROMAT_FILE:
MSMg01no109_k18.g1 PHD_FILE: MSMg01no109_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:59 2005
         (143 letters)



>mm_chr14_26039089_26039631
          Length = 543

 Score =  265 bits (137), Expect = 8e-76
 Identities = 140/141 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcactatttattcatgtcttgagtttgcagtattccttcccatgtctcagagttcataga 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 341 tcactatttattcatgtcttgagtttacagtattccttcccatgtctcagagttcataga 282

                                                                       
Query: 61  ctctgtggtgccaatgtggagaacaccttgcttgctggctatgcagctataaatcctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctctgtggtgccaatgtggagaacaccttgcttgctggctatgcagctataaatcctgtg 222

                                
Query: 121 ggaagctggcaacctccatca 141
           |||||||||||||||||||||
Sbjct: 221 ggaagctggcaacctccatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)