BAC Information

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BAC

Clone NameMSMg01-110I06
Chromosome14 (Build37)
Map Location 102,808,662 - 102,808,984
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110I06.T7 (MSMg01no110_i06.b1)MSMg01-110I06.TJ (MSMg01no110_i06.g1)
ACCAG323422AG323423
length736754
length of high quality
(start - end)
322 (64 - 385)109 (131 - 239)
definitionCHROMAT_FILE: MSMg01no110_i06.b1 PHD_FILE: MSMg01no110_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:07 2005CHROMAT_FILE: MSMg01no110_i06.g1 PHD_FILE: MSMg01no110_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTGTCTGGTGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCTTGCAGATCATTGGCTTTTTTTTACCA
ATTGTTTTCAATTAGTAAATTGTTTCATTGCACTATGACTGACTTGGAGC
AAGCTATCCACATATGTGTTGTTAGGGTTTATCTGGGCTTCCTATCTCTG
TATAGAAGCCTAGTAACACTTTTAAGGGAGTAGTTGGTGCAGTTATTGGT
TCACCTTCTTATTATCTCATCTCTAAAGAATCCTTGTTCTTGACAATTGC
GTTATATATATCTTGAAAAACAAAAGTAAAGTTTTGCTGATAGTTTTTGT
TCAGCTTTAAGATATTGGAACAATAAGAACACAGACAAGCGTGAGACTAT
ATAGCACAGGATAGAGCACCAGACTTTTCTCTCTCACACTGGATAAGATT
GCTTGTTTTCTTGTGAGCTGTATATTTTAGTTTGACAGGGGACATGAGAG
AAGCATGAAGGATTTGACATGGGCGCAGGCAGGTATGAAGGTACGTTACT
GATTGTCAGCAAACACGAGCCATCTGAGCCTACTGTTCGAATGGTGTCCT
TTTTTGAAAAGACTACACACTTCTTTATTGACACTATCTTCCTTTCTTGT
TACCCTAATTGAATATCATTATGTTTACTTCCACCTATAATATTATTTTA
TGCTTACTAGCTTTTGGTTTATCAATTCGCCTCTTT
CACCACACTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCGAAAAATTCAGAGTTGGGTTTGCTCATTG
ATGACGTCTTCGAGGCAATACATCTTCCGCCACTATGAACACTAGTTAAT
AGGGAGGAATCCAGCTCAGTTACAGTTTGATTTCTCTATCTCATATCCAA
GGTGTGTATTGCCTTCTGTAATCTATTCTTCTGGTTTGGCTTTGGAGGGT
AGCAATGATTATAGCCTATATTATTTCTAGTGCTGCTGGGGACTTCCTGG
TCAGAAATACATAGATAAATATTATTATCTTGTGACTGAGAATTAGGTAC
AATCACATACAGTCATAGGTATATCTTCTGGGAGAAGCATCCACACATGA
AACGATTCTGTTCAAGCTTCTTTTAACAAAATAGCACTTAGCCAGCTTAT
AAGTTGTTAGGTTCCTATGACTTCTTCACAGTACCTAGTTTTGGTTGTCT
CCCTTCCTTTTCTTCTCATTTTTCTTTCTTTTCCTATTACCCCTCCCCCT
TTTCATACTTTTCCATCTCTTAGTTTTCTTCAATTCCCATCTTCCCTATC
TCACATCGTTTCCATTTTTTTCCTCCCTTTACTCCTGTTTCCTCGCTTTC
TTCACTGCAGTCCCCTTAAATCTTTACTACTTTTATTTTCACTATCTCAT
ATTTTTGTTTTTCCTTTCCTTTTTTTTTTCTTTTTCCCCCCTTTTTTTTC
CTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_i06.b1 MSMg01no110_i06.b1 CHROMAT_FILE:
MSMg01no110_i06.b1 PHD_FILE: MSMg01no110_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:07 2005
         (322 letters)



>mm_chr14_102808458_102809180
          Length = 723

 Score =  534 bits (276), Expect = e-156
 Identities = 310/324 (95%), Gaps = 7/324 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgcagatcattggc-ttttttttaccaattgttttcaattagtaaattgtttc 63
           |||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaatacttgcagatcattggctttttttttaccaattgtttttaattagtaaattgtttc 264

                                                                       
Query: 64  attgcactatgactgacttggagcaagctatccacatatgtgttgttagggtttatctgg 123
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgcactctgactgacttggagcaagctatccacatatgtgttgttagggtttatctgg 324

                                                                       
Query: 124 gcttcctatctctgtatagaagcctagtaacacttttaagggagtagttggtgcagttat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcttcctatctctgtatagaagcctagtaacacttttaagggagtagttggtgcagttat 384

                                                                       
Query: 184 tggttcaccttcttattatctcatctctaaagaatccttgttcttgacaattgcgttata 243
           |||||| ||||| ||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 385 tggttc-ccttcatattatctcatctctaaagaatccttgttctggacaattgtgttata 443

                                                                       
Query: 244 tatatcttgaaaaacaaaagtaaagttttgctgatagtttttgttcagcttta-----ag 298
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||     ||
Sbjct: 444 tatatcttgaaaaacaaaagtaaagttttgctgatagtttttgttcaactttattttaag 503

                                   
Query: 299 atattggaacaataagaacacaga 322
           ||||||||||||||||||||||||
Sbjct: 504 atattggaacaataagaacacaga 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 723
Length adjustment: 9
Effective length of query: 313
Effective length of database: 714
Effective search space:   223482
Effective search space used:   223482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)