Query= MSMg01no111_a05.b1 MSMg01no111_a05.b1 CHROMAT_FILE:
MSMg01no111_a05.b1 PHD_FILE: MSMg01no111_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:47 2005
(729 letters)
>mm_chr14_39927091_39928218
Length = 1128
Score = 1324 bits (685), Expect = 0.0
Identities = 718/729 (98%), Gaps = 1/729 (0%)
Strand = Plus / Plus
Query: 1 gccctatgacagtatcagagcctggctctccacctgtacaataagatgctcttttaaaac 60
||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||
Sbjct: 201 gccctatgacagtatcagatcctggctctccagttgtacaataagatgcttttttaaaac 260
Query: 61 tacttacccagtctttctaacttgagatctcccccaccatctccacagttgatactatgg 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tacttacccagtctttctaacttgagatctcccccacaatctccacagttgatactatgg 320
Query: 121 catgcatcataagtgcactgaagaatgtagcaggtagattaaggtaataatcttcttaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgcatcataagtgcactgaagaatgtagcaggtagattaaggtaataatcttcttaag 380
Query: 181 tagctttgagatgatttgggtttgagataaaaagctgtaattaggttccctaccagttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagctttgagatgatttgggtttgagataaaaagctgtaattaggttccctaccagttta 440
Query: 241 atagcatggatgctattagcaaggctcaagtcttgagaaaatattacagaacaaaataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagcatggatgctattagcaaggctcaagtcttgagaaaatattacagaacaaaataaa 500
Query: 301 aaatcacaatggagtcatttggggcttttaggtacaaaaatctgtagtggtttaaaaaaa 360
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 aaatcacaatggagtcattttgggcttttaggtacaaaaatatgtagtggtttaaaaaaa 560
Query: 361 gattgtgggattctaaattttcttcatctgatcttgttaggtaagctactttaaacacct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gattgtgggattctaaattttcttcatctgatcttgttaggtaagctactttaaacacct 620
Query: 421 tctttctcatctattaatactgttcaaccaatcaagaaaaaaaaatggcatcctatttaa 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 tctttctcatctattaatactgttcaaccaatcaagaaaaaaaa-tggcatcctatttaa 679
Query: 481 cattttaataaattaccagcctactttatgttctctagcagacctttattactgatagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cattttaataaattaccagcctactttatgttctctagcagacctttattactgatagaa 739
Query: 541 aattttcttgtgagacagtgtccttaaatgtattactaaaactctagtggcaatttgtct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aattttcttgtgagacagtgtccttaaatgtattactaaaactctagtggcaatttgtct 799
Query: 601 ttggctatacacaaaagaagaggaatttaaaaaaaattatttacaattagatctcagcag 660
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 800 ttggctatacacaaaagaagagaaattttaaaaaaattatttacaattagatctcagcag 859
Query: 661 ctttcttagttatttatttatatttttagcctagaagcctgaagcacaaatacaaatttt 720
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 ctttcttacttatttatttatatttttagcctagaagcctgaagcacaaatacaaatttt 919
Query: 721 cttttaaat 729
|||||||||
Sbjct: 920 cttttaaat 928
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1128
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1118
Effective search space: 803842
Effective search space used: 803842
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_a05.g1 MSMg01no111_a05.g1 CHROMAT_FILE:
MSMg01no111_a05.g1 PHD_FILE: MSMg01no111_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:47 2005
(692 letters)
>mm_chr14_40067087_40068179
Length = 1093
Score = 1187 bits (614), Expect = 0.0
Identities = 629/634 (99%), Gaps = 1/634 (0%)
Strand = Plus / Minus
Query: 60 cctttaaagtgtatgatattttgcccctgtgtatgtgtgtgaggtctatgcctagtgctc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 cctttaaagtgtatgatattttgcccctgtgtatgtgtgtgaggtctatgcctagtgctc 1034
Query: 120 acccagaccaaaaaagaaagctagattccatgaagctggagttatctgtgttataaacca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 acccagaccaaaaaagaaagctagattccatgaagctggagttatctgtgttataaacca 974
Query: 180 ccatgtagatacttggaaccaagtttggattctttgtaagactagaaaatgctttttaac 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 973 ccatgtagatacttggaaccaagtttggattctttgtaagactagaaaatgctttttacc 914
Query: 240 actgagtcatctctctatccacaatttatattcatgcttgtggttttatatcttgctatt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 actgagtcatctctctatccacaatttatattcatgcttgtggttttatatcttgctatt 854
Query: 300 tctagaaaatgtttatacaaaattttatgtttcaaaatgaaaaataagtagcttatatgg 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 tctagaaaatgtttatataaaattttatgtttcaaaatgaaaaataagtagcttatatgg 794
Query: 360 taacacagaagcatataataacataaaatgagtaatttctcttaaactatgtatttctct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 taacacagaagcatataataacataaaatgagtaatttctcttaaactatgtatttctct 734
Query: 420 agaaaatgcctgaatttattacaaatatacttttatctttagaaaattatttggaagata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agaaaatgcctgaatttattacaaatatacttttatctttagaaaattatttggaagata 674
Query: 480 ttttgtgacaattacaacttacttcttgtgcaactggtacgtt-aagcacagctaagtag 538
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 673 ttttgtgacaattacaacttacttcttgtgcaactggtaagttcaagcacagctaagtag 614
Query: 539 aaatatgactaaaggtacctagttttcacctactttagtgcttatttgcgaatcaattaa 598
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 613 aaatatgactaaaggtacctagttttcacctactttagtgcttatttgtgaatcaattaa 554
Query: 599 ctgagcatgttaaaacaacttataccaggtatgaggaggaccatggatgtacctactaat 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctgagcatgttaaaacaacttataccaggtatgaggaggaccatggatgtacctactaat 494
Query: 659 tcttgtaccataggaagtaggattttattgctgg 692
||||||||||||||||||||||||||||||||||
Sbjct: 493 tcttgtaccataggaagtaggattttattgctgg 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1093
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1083
Effective search space: 738606
Effective search space used: 738606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
