BAC Information

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BAC

Clone NameMSMg01-111A20
Chromosome14 (Build37)
Map Location 120,823,337 - 120,824,088
singlet/doubletsinglet
Overlap geneMbnl2
Upstream geneHs6st3, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831
Downstream geneRap2a, LOC668835, LOC668837, Ranbp5, Farp1, LOC100043837, Stk24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111A20.T7 (MSMg01no111_a20.b1)MSMg01-111A20.TJ (MSMg01no111_a20.g1)
ACCAG323820AG323821
length1,1491,140
length of high quality
(start - end)		766 (53 - 818)708 (81 - 788)
definitionCHROMAT_FILE: MSMg01no111_a20.b1 PHD_FILE: MSMg01no111_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:53 2005CHROMAT_FILE: MSMg01no111_a20.g1 PHD_FILE: MSMg01no111_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTGTTTATNNNNNNGACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTAATACTATTATACCCTGACATGTATGGTACAACAAA
ACTTTGAACTGAAAATACTGTTTTCAAGTTCCCTTCCCACTAAAAGGAGA
ACACACAGAAATGAAGACAGCTGACAGCCACAAAGTTTACAGTTCAAGTT
AGAAAACAAAGACACACTTGACCTCTGGTCAAGAGTGCCTTCACCAATCA
GTTGTGGGCCCTCTGGCTATAGCGATGTGTCATAAAAAAAAAGTCGGAAG
GCTGCGATCGAATCTACTTGTTAATAAGGAGATAAAATCATATGAATCAA
TTAAACTCTACCCCTTAAATTGCTGTATTTAAGTCTGATGGTTCTCCTCA
GTGTGTAGGTACTCTATGCTATAGCCCCTGTGAACAGAGTCTGTGAGAGG
TCTGATACTTTTTGCAGACAGAGCATGGATGACTCACAAGAGCATCAAGC
AGGTCTCCCTATCATCCATTGGGTAGCCACTAACTAATCTTGTATCCTTA
CTGAGGTGTGTGGTGATGAATGGCAAGAGAGATTACGAAGAGGTGCTCTG
GGCTAGGCTTGTCTAAGGAAATACTAAACCTTTCAAGGCCCAGTAGCAGA
AACTTCTGTGAATGATCCACATTACAGAGAATGATCTGTGTGGCTCCGAT
CCATCTCTGGGCTGGATTCAGCAACAGATTATTGGTGTGCATAGGCGCCA
GACTCACTTCCTTGGAGGAGAGATCCAACTGAGTCTAGACTGCTGCTTCC
AGGGTTGAGCAATAGTTGTAGCAAGTCAGGGCAGACAGTGGCAGGGAAGT
TGGTGGCACTGGGAGAGAATGTGTACTGGGGAGTTAATCCTGCAACTTCC
AGACATTTAGTGCTCACTCCTAGGACTAGGGCACTAGACCAGAAGAAGCC
CAACCGCTAAAAGAAAATATGACCATCCTGCCCCTGAATCCAATCTCCCC
TATGAAAAATTCCGGTTATCTTGTCTCCCTCTTAAGGAGAAGGGATTTAG
GAAGAACCCTCCCCTCCCTTGGAAAAAAACCTGGACCCGGAAGTGGAAAT
GTGACTTGGGGGGAAAAAGAAAAAACATTTGTTTTCGGAACCGGAATTC

CGTTATTTNTNTATCATGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTTAAAGCTGTTGATGGGTGTACTCTG
TGAGATTTCAGAGCTGTTGATTGGTGTACTCTGTGAGATTTCAGAACTGT
TGATTGGTGTACTCTGATATTTCAGAGCTGTTGATTGGTGTACACTGTGA
GAATTCAGAGCTGTTGATTGGTGTACTCTGTGAGATTTCAGAGCTGTTGA
TGGGTGTACTCTGTGAGATTCAGAGTGCTGATTGGTGTACTCCATGAGAT
TTCAGAGTTGTTGGTTAGCGAATCCTGTTGACTGAGCAAGAGTTTGCGTT
TTTTTTTTTTTCAGACTTGTTAGTTTGATTGGAAAGTGGTTTAGGGGAGA
AAGAATCGTCGTGTGTGTGTGATTTTGTTTTGTTTGTTTTGTTTTTCGAG
CCAGGGTTTCTCTGTATAGCCCTGGCTGTCATGGAACTCACTCTGTAGAC
CAGGCTGGCCTCGGACCCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCT
GGGATTAAAGGTGTGCGCCAACACTGCCCCACTGGTCTTATGTTTTATCT
CCTTAAACTTCTCAGGAATTGAGCCGCTCAGTGGGACTAAGCAGTGTAGC
TATTCCTTCTGGCCTATGATGGCCATTTGTCAGAGTTAAAATTTATATTT
AAAAAAATACCTATTTACATAAGTCATCAGTGTAGACAAATTTATTTACT
TTGTTAACTTTTCATGTAACAATATTTGCTAATACTCTTTGTTTTCTGCA
TTCTCTGTTAGCCATCTACAAGTACAATGATCAGAGGGGTGAAGGATTTT
GTAGCCTTTACCAATCTACAAAGTTTAATACCAACCGACCATCTAATGAA
ACCACCTAAAGCCTTTCCAGTATCACTTGAGAAGACCAGGGGATATCCCC
ACTCCGTGTAATTTCCCCAAATTACCCCTTAGGTCTAAAAATTACCTTCA
GGGTTTTGCCTGTTGGGTAATCTTTTTAAACCTACCCGAATTTTCCGGGT
TTTATATTTTGGGTCCTAAAATCCCAAAATATTTCTAAATTTTTTAAATA
TGTTCTGTAAAAAAAAAAAAATATTTCTGTGTTTCTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_a20.b1 MSMg01no111_a20.b1 CHROMAT_FILE:
MSMg01no111_a20.b1 PHD_FILE: MSMg01no111_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:53 2005
         (766 letters)



>mm_chr14_120822969_120824136
          Length = 1168

 Score = 1317 bits (681), Expect = 0.0
 Identities = 738/765 (96%), Gaps = 16/765 (2%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattctt-aatactattataccctgacatgtatggtacaacaaaactttgaactgaaaa 63
            |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 1120 gaattcttaaatactattatactctgccatgtatggtacaacaaaactttgaactgaaaa 1061

                                                                        
Query: 64   tactgttttcaagttcccttcccactaaaaggagaacacacagaaatgaagacagctgac 123
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1060 tactgttttcaagttcccttcccattaaaaggagaacacacagaaatgaagacagctgac 1001

                                                                        
Query: 124  agccacaaagtttacagttcaagttagaaaacaaagacacacttgacctctggtcaagag 183
            ||||||||||||||||||||||||||||||||             |||||||||||||||
Sbjct: 1000 agccacaaagtttacagttcaagttagaaaac-------------acctctggtcaagag 954

                                                                        
Query: 184  tgccttcaccaatcagttgtgggccctctggctatagcgatgtgtca-taaaaaaaaagt 242
            ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 953  tgccttcaccattcagttgtgggccctctggctatagcaatgtgtcattaaaaaaaaagt 894

                                                                        
Query: 243  cggaaggctgcgatcgaatctacttgttaataaggagataaaatcatatgaatcaattaa 302
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893  tggaaggctgcgatcgaatctacttgttaataaggagataaaatcatatgaatcaattaa 834

                                                                        
Query: 303  actctaccccttaaattgctgtatttaagtctgatggttctcctcagtgtgtaggtactc 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833  actctaccccttaaattgctgtatttaagtctgatggttctcctcagtgtgtaggtactc 774

                                                                        
Query: 363  tatgctatagcccctgtgaacagagtctgtgagaggtctgatactttttgcagacagagc 422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773  tatgctatagcccctgtgaacagagtctgtgagaggtctgatactttttgcagacagagc 714

                                                                        
Query: 423  atggatgactcacaagagcatcaagcaggtctccctatcatccattgggtagccactaac 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713  atggatgactcacaagagcatcaagcaggtctccctatcatccattgggtagccactaac 654

                                                                        
Query: 483  taatcttgtatccttactgaggtgtgtggtgatgaatggcaagagagattacgaagaggt 542
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653  taatcttgtaaccttactgaggtgtgtggtgatgaatggcaagagagattacgaagaggt 594

                                                                        
Query: 543  gctctgggctaggcttgtctaaggaaatactaaacctttcaaggcccagtagcagaaact 602
             ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 593  actctgggctaggcttgtctaaggaaatactaaacctttcaaggccaagtagcagaaact 534

                                                                        
Query: 603  tctgtgaatgatccacattacagagaatgatc-tgtgtggctccgatccatctctgggct 661
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 533  tctgtgaatgatccacattacagagaatgatcttgtgtggctccgatccatctctgggct 474

                                                                        
Query: 662  ggattcagcaacagattattggtgtgcataggcgccagactcacttccttggaggagaga 721
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473  ggattcagcaacagattattggtgtgcataggcgccagactcacttccttggaggagaga 414

                                                         
Query: 722  tccaactgagtctagactgctgcttccagggttgagcaatagttg 766
             |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 413  cccaactgagtctagactgctgcttccagggttgaacaatagttg 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 766
Length of database: 1168
Length adjustment: 10
Effective length of query: 756
Effective length of database: 1158
Effective search space:   875448
Effective search space used:   875448
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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