BAC Information

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BAC

Clone NameMSMg01-111A24
Chromosome14 (Build37)
Map Location 49,588,591 - 49,723,027
singlet/doubletdoublet
Overlap geneExoc5, 4932432K03Rik
Upstream geneMap1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972
Downstream geneLOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111A24.T7 (MSMg01no111_a24.b1)MSMg01-111A24.TJ (MSMg01no111_a24.g1)
ACCAG323828AG323829
length1,1431,146
length of high quality
(start - end)		743 (68 - 810)220 (114 - 333)
definitionCHROMAT_FILE: MSMg01no111_a24.b1 PHD_FILE: MSMg01no111_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:54 2005CHROMAT_FILE: MSMg01no111_a24.g1 PHD_FILE: MSMg01no111_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(49,722,285 - 49,723,027)(49,588,591 - 49,588,810)
sequence
TACATTGCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
GTTCTAACTTTCTTCGGTGATGAACAGCCATGTGGATGTGTAAGCTAAAT
AAACCCTTTAATCCTCAACTTAATTTTTTGGTCATGGTGTTTCATTGCAG
CAATAGAAACCCTAAGACACCCACTCTACAATCTTATTTACAAAGCAAAT
CCTCCGAATGATGCAACGTGAAAGGGTACTATTCTTTACTAAGAACACAG
AAACTTTGGTGGCATCCCAGAAATTCTGGAGTACAGAAGTGCTGAGAGCC
CTGGTGAACGAGAAGACTGGATATTAAGACTGAACCAATGCTGAGGGCCA
ACTTAAGGACAGCTGAGTTGTCTCTGCATTCAACGAGCAAACCAGTCTTT
GTGGCATTAATAGTAAGATGCAGCATCCAGCTAACCATGCTGCAGAGCGC
ACACATCCAGATGGAAGCATCTGGATGGTGCACCGTGATTGGACAATTGT
TCCTTTGGTGACTGGAACACCCTTTCTGCTTCTCACCCAGAGAATGCTGG
TGCGCATGCAAGGATGGGAAGAAGGGCAGCATACTCCTGCTTTTGCTGGT
GGATGTACCTGGCTCCAAACTACACTATACAAGGCATGTTTGGGGGGCAG
AGATGAAAGTCATGAGCGTGTGGATACAGGGTAATCCCTTCTTGATGTAG
GGGACACATCTCCCAGGAAGTTAAACACAATGATCAAACTGACCAAAAGT
TGGCAATGTTTTCTTCCTTCCTTCCTGCCTCCTTTTCCCCTTTCCTTCCT
TCTTTCTTCCACCTCTCCACTTCCTTTCTTTCCTTTTTTGCTCCACCTTC
TTTTCTTTTCTTATTTCACAACAGGTGTCCCCACAGTAAAGCCCATCTTT
GGCCCTTTCACTTCAGCCTCTTCGCTAGACAAGAATCCAGAAGATCTTTA
ACTTCTGGCCTTCCCAAGTGGCTTTAGGTAATAAAGGGTGAAGCACTTGG
CCTTGTCCCCCAGGAAAATTTGGCCTGCCTTTTTTTGTCTATTGCCCACC
CCGTTTTATTTAAAACAATGGGCTTTGGTTAGGGAAAAAAATTATTTTCT
TCCAAAAAATTACCCTTTCCAAAATTCTCAAAACAAAACTAAA

GATGCTGGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTACTCCACCTCCACCAGTAGACAGCTCTTCTGCAGATGC
TGTCACCATCCTGTGACAGCGGAGGGGGTCGACCTTGGTGAACTGAGTAT
TGAATGACACTTTTAGACATACCTTGGAGTCCCTCCGGTGGAAGCGACTC
CAGCGTTCTGGGCAAGGGTTACAAAAGCGAGGGCAGCGTCCAGTTCCCCA
GAGCCGCACATACACAGGCACAGGCGTCCTCACCCCATCTGCTGTGGTTC
TGGGACCATGGCTCTGAAGTTCATACGGGCTGTAACAAGTGGTTTGGTAA
AACCTAAGCATTCCGGTTGGACATGCCCACAAGCAGTCGCAGGCCTTGAT
AGAGGGCGGGACATTCCAGCAGACCCCAGTGTTACTGCTTCTGTGGTTTC
TTCATTTTATTAAGGGGTTTCTGTGGGGGTTTTGAAACAGTAACTATGAT
CCTCCAGGGTATGAGGTAGCCTGGATAACAATATGTGACATATCCCGGGA
TCAGAAAGAAAACTTCTCTACATCCTAGAAATGGTACCCATTCATTGGGA
GATGCCCACCCGACTTTGGGGCTTCCCTGTTCCCATGTCCGACTGCTGAG
CATGCTTCCAGAGAATGCTCATCCGTTCATCCTGGTGCTTTAGCACTTGA
CCCATAGGTTTTTTATCATCTGTCCTTGAATCCTCGCCGCCCCATATATA
CTTCCTTTTCTCTATCTCTCCCGCTTGTCTCTGTATGTCCCTCCACCTGC
CTTTCTGTTTCCTCCGCCCACTGTCTGCGTGACGCTCCCCTCTCTCCCCT
CCCCTCCCCGCCTGCCCTTTCTTCAAGAATGCTGCCCCCCCGGGAATGGT
CTCCCGCTGTTCCCGGTTTCTCCCTCCCCCCCCCCGCATCTTCTTGAAGC
AATCTATTCTCGCGTCTACCCACAACCCTTTTTTTCAAAAGCACCCCCTC
TCCCAACATTCTTCTTTTTTATCTTCAACAAAACTCTCCTTATACCAGGT
CTCTTCTCACAATTTTCTGGCAAAAATACTCTCCTGGGACCTCTCCCCGT
ATGTGCTTCCTTCCCTTTTGCTGTTCGCATTCTCCCGTCATCTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_a24.b1 MSMg01no111_a24.b1 CHROMAT_FILE:
MSMg01no111_a24.b1 PHD_FILE: MSMg01no111_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:54 2005
         (743 letters)



>mm_chr14_49722038_49723180
          Length = 1143

 Score = 1437 bits (743), Expect = 0.0
 Identities = 743/743 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatgaacagccatgtggatgtgtaagctaaataaaccctttaatcctcaacttaatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 tgatgaacagccatgtggatgtgtaagctaaataaaccctttaatcctcaacttaatttt 931

                                                                       
Query: 61  ttggtcatggtgtttcattgcagcaatagaaaccctaagacacccactctacaatcttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 ttggtcatggtgtttcattgcagcaatagaaaccctaagacacccactctacaatcttat 871

                                                                       
Query: 121 ttacaaagcaaatcctccgaatgatgcaacgtgaaagggtactattctttactaagaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ttacaaagcaaatcctccgaatgatgcaacgtgaaagggtactattctttactaagaaca 811

                                                                       
Query: 181 cagaaactttggtggcatcccagaaattctggagtacagaagtgctgagagccctggtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 cagaaactttggtggcatcccagaaattctggagtacagaagtgctgagagccctggtga 751

                                                                       
Query: 241 acgagaagactggatattaagactgaaccaatgctgagggccaacttaaggacagctgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 acgagaagactggatattaagactgaaccaatgctgagggccaacttaaggacagctgag 691

                                                                       
Query: 301 ttgtctctgcattcaacgagcaaaccagtctttgtggcattaatagtaagatgcagcatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttgtctctgcattcaacgagcaaaccagtctttgtggcattaatagtaagatgcagcatc 631

                                                                       
Query: 361 cagctaaccatgctgcagagcgcacacatccagatggaagcatctggatggtgcaccgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 cagctaaccatgctgcagagcgcacacatccagatggaagcatctggatggtgcaccgtg 571

                                                                       
Query: 421 attggacaattgttcctttggtgactggaacaccctttctgcttctcacccagagaatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 attggacaattgttcctttggtgactggaacaccctttctgcttctcacccagagaatgc 511

                                                                       
Query: 481 tggtgcgcatgcaaggatgggaagaagggcagcatactcctgcttttgctggtggatgta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tggtgcgcatgcaaggatgggaagaagggcagcatactcctgcttttgctggtggatgta 451

                                                                       
Query: 541 cctggctccaaactacactatacaaggcatgtttggggggcagagatgaaagtcatgagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cctggctccaaactacactatacaaggcatgtttggggggcagagatgaaagtcatgagc 391

                                                                       
Query: 601 gtgtggatacagggtaatcccttcttgatgtaggggacacatctcccaggaagttaaaca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtgtggatacagggtaatcccttcttgatgtaggggacacatctcccaggaagttaaaca 331

                                                                       
Query: 661 caatgatcaaactgaccaaaagttggcaatgttttcttccttccttcctgcctccttttc 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 caatgatcaaactgaccaaaagttggcaatgttttcttccttccttcctgcctccttttc 271

                                  
Query: 721 ccctttccttccttctttcttcc 743
           |||||||||||||||||||||||
Sbjct: 270 ccctttccttccttctttcttcc 248


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 743
Length of database: 1143
Length adjustment: 10
Effective length of query: 733
Effective length of database: 1133
Effective search space:   830489
Effective search space used:   830489
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no111_a24.g1 MSMg01no111_a24.g1 CHROMAT_FILE:
MSMg01no111_a24.g1 PHD_FILE: MSMg01no111_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:54 2005
         (220 letters)



>mm_chr14_49588391_49589010
          Length = 620

 Score =  418 bits (216), Expect = e-121
 Identities = 219/220 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacagcggagggggtcgaccttggtgaactgagtattgaatgacacttttagacatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacagcggagggggtcgaccttggtgaactgagtattgaatgacacttttagacatacc 260

                                                                       
Query: 61  ttggagtccctccggtggaagcgactccagcgttctgggcaagggttacaaaagcgaggg 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggagtctctccggtggaagcgactccagcgttctgggcaagggttacaaaagcgaggg 320

                                                                       
Query: 121 cagcgtccagttccccagagccgcacatacacaggcacaggcgtcctcaccccatctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcgtccagttccccagagccgcacatacacaggcacaggcgtcctcaccccatctgct 380

                                                   
Query: 181 gtggttctgggaccatggctctgaagttcatacgggctgt 220
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggttctgggaccatggctctgaagttcatacgggctgt 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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