BAC Information

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BAC

Clone NameMSMg01-111N18
Chromosome14 (Build37)
Map Location 83,347,735 - 83,475,526
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111N18.T7 (MSMg01no111_n18.b1)MSMg01-111N18.TJ (MSMg01no111_n18.g1)
ACCAG324422AG324423
length1,1271,121
length of high quality
(start - end)
765 (74 - 838)334 (114 - 447)
definitionCHROMAT_FILE: MSMg01no111_n18.b1 PHD_FILE: MSMg01no111_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:43 2005CHROMAT_FILE: MSMg01no111_n18.g1 PHD_FILE: MSMg01no111_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,474,912 - 83,475,526)(83,347,735 - 83,348,068)
sequence
NNAATCTATGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCT
CTACCATGTAGCTCTTTTACAACTTGCATTGCAGAAACTTTTGCTTCTCG
ATTTACATATGGATGCTAACTCTTGGATGTATGATAAGCTTCCTCTATAT
AGAAGTTCTTTTTTTTTGTCTTTATTTCTATTGAACTGCACTTATAAGGT
AATGATAATATTCTTCAATAAATTCATCCCCTAGTTATTTGTGAATTTCA
TTCCTTAAAATTATGAGACGAGGAAACTGAAAGCCTAGGGATGGTTTTGA
TGGGCATTGATTTCTTTATTAGAGGAACAGCATAAACTATGCTTTGTGAG
AAAAGAAAGCCTCTGTCACTTTGAGATTCAGTACTTTTTCATATACACAG
GAACAAAAATTATCTAGAAGACAGGCCTGTGGCATGTCACTGAAGTATTA
CTAGGACCAGGACTGCTTTAGCGGGATCATGAGAGTCTAGATGGCTCAGC
AGGTAAAGGGACTTACTGAGAAGTCTGATGAGCTGAGTTCAGTTTCCAAG
TCTAGCATGGAAGAAGGTTTTTCTCTGCTTTCTATACGTGTGCTTCTTTC
TGCATCTACAAACAATGACAAATATCTTCATCAAGCTACAAAGTAAACTG
ACAAACTAACAGTGGAGTTCCTGCAGACCAACAACAGGTTCAAAGAAAAT
AAAATTTTGAAAACAGCCACAATCATAGCAGCCTCCCAATTCCTCAAGCC
TAAAAATAAAAAATGAACAAAAGTATAAATGACCTCTATGTCACTATAAA
ACATTGAACATTGAGAAGGATAGTACATGATGGGATCTGCCCCATATTCA
TGTCAGCATTAACAGTGTGTAAATTCTCATTATTAGAGTCAATGAATAAT
TCAGTGCAGTAATCCCTGAAAGTCAATGCTATTCTTCATAGAAATGTATG
TTAAAATATACTAAAAATCATAGGGAATCCCTTCTGTGAAAAGAACTTTG
GACAATGGTTTTCTTTTTCTTAACTGACTTGGACCTTTACTACAAAAAAT
TTCCACCCTAATATTTCCCGGAAAAAAATTTTTAAATGGGAGAAATTTTT
TGGAGGGGGAACCCCATGAACCATATC
NNAAAACATTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCATTAAATTTGTAGACCAGGCTGGACTAGAACTCA
AAAATCCGTCAAACTCTGCCTCCCAAGTGCTGGAATTAAAGGCATGTGCC
ACCATGCCCAGCTGATCTTTTTAAATTCTTATATTATGTTCAGTTTGTTT
TATTAGGTTTAAAATTAAGCCAAAGTGTAATTCTCATCATCTACCACTTT
AACTCATTGTTTTATTATTTACGTTTAAATATTTTCTTTAGGAATTTTTT
ATTTTGTTATTCTTTACAAAGTTGTGCATTTATTACAAACATCTTTGTAA
AGAGTAACTGAAATGAAACAATTTTATTCTTGCTTCTTTACTTGTTTTTT
GTATTCTTTTTGGATTTCTGGTACATTTGTTTCTTGTCTCATGTCATCAT
TGAATTGGTTTTATTAAAGAATTTATCCATGCAAATAATTGAGAAAGGAA
GCAAATTGTATCATACTGTATCATTTATTACTCTATAATAACTGGTACTA
GGGTAGTAGATTTGTACTTGTATTCATGTGAGATTGAATATACTGTTACA
TTTTTTTCTAGAGTGAATAAATATTTGTACATTTTAACAGGTGATGCTGT
TGATTGTAATACTGTCCCACGAACATTCATTTCTTCATTTTTCCTTTTTA
ATATTCATAAGAAATGACTATAGCCATCAGTACTATGCGTTGAGGATTAT
CTCACATTAAAATCATTGAATAACTACCATCCTGTGATAATAGGTCACCA
CTATGCATTTTAAATAGTTTAATAAATATATTTTGTGGACAACATATACC
TATAACAATATTTTTGTTATATTTTGTTATCTCATTCTTCTCTTTGAAAA
AAGATATATAGTAGTCCCTTCTTGTTGGTAAAAGAATATTTAAGAGGAAA
ATGTATTTAGTACCCCCGAATGGTAAAAATTGGGTTGGACGACCATTTGT
TAACTATGGAGGAAGGAAATATTCTGGCCCCTATGAAAGGTTCCCATAAC
CGTAATTTTAACAAGGGGGCCCTGAATCTTTTTTAAAAGTTTTATGTGGA
AGGCCCCCGGTTTTTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_n18.b1 MSMg01no111_n18.b1 CHROMAT_FILE:
MSMg01no111_n18.b1 PHD_FILE: MSMg01no111_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:43 2005
         (765 letters)



>mm_chr14_83474912_83476076
          Length = 1165

 Score = 1181 bits (611), Expect = 0.0
 Identities = 614/615 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcattgcagaaacttttgcttctcgatttacatatggatgctaactcttggatgtatg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 615 ttgcattgcagaaacttttgcttctcgatttagatatggatgctaactcttggatgtatg 556

                                                                       
Query: 61  ataagcttcctctatatagaagttctttttttttgtctttatttctattgaactgcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ataagcttcctctatatagaagttctttttttttgtctttatttctattgaactgcactt 496

                                                                       
Query: 121 ataaggtaatgataatattcttcaataaattcatcccctagttatttgtgaatttcattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ataaggtaatgataatattcttcaataaattcatcccctagttatttgtgaatttcattc 436

                                                                       
Query: 181 cttaaaattatgagacgaggaaactgaaagcctagggatggttttgatgggcattgattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cttaaaattatgagacgaggaaactgaaagcctagggatggttttgatgggcattgattt 376

                                                                       
Query: 241 ctttattagaggaacagcataaactatgctttgtgagaaaagaaagcctctgtcactttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctttattagaggaacagcataaactatgctttgtgagaaaagaaagcctctgtcactttg 316

                                                                       
Query: 301 agattcagtactttttcatatacacaggaacaaaaattatctagaagacaggcctgtggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agattcagtactttttcatatacacaggaacaaaaattatctagaagacaggcctgtggc 256

                                                                       
Query: 361 atgtcactgaagtattactaggaccaggactgctttagcgggatcatgagagtctagatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atgtcactgaagtattactaggaccaggactgctttagcgggatcatgagagtctagatg 196

                                                                       
Query: 421 gctcagcaggtaaagggacttactgagaagtctgatgagctgagttcagtttccaagtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gctcagcaggtaaagggacttactgagaagtctgatgagctgagttcagtttccaagtct 136

                                                                       
Query: 481 agcatggaagaaggtttttctctgctttctatacgtgtgcttctttctgcatctacaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 agcatggaagaaggtttttctctgctttctatacgtgtgcttctttctgcatctacaaac 76

                                                                       
Query: 541 aatgacaaatatcttcatcaagctacaaagtaaactgacaaactaacagtggagttcctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  aatgacaaatatcttcatcaagctacaaagtaaactgacaaactaacagtggagttcctg 16

                          
Query: 601 cagaccaacaacagg 615
           |||||||||||||||
Sbjct: 15  cagaccaacaacagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 765
Length of database: 1165
Length adjustment: 10
Effective length of query: 755
Effective length of database: 1155
Effective search space:   872025
Effective search space used:   872025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no111_n18.g1 MSMg01no111_n18.g1 CHROMAT_FILE:
MSMg01no111_n18.g1 PHD_FILE: MSMg01no111_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:43 2005
         (334 letters)



>mm_chr14_83347535_83348268
          Length = 734

 Score =  607 bits (314), Expect = e-178
 Identities = 329/334 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgcctcccaagtgctggaattaaaggcatgtgccaccatgcccagctgatcttttta 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgactcccaagtgctggaattaaaggcatgtgccaccatgcccagctgatcttttta 260

                                                                       
Query: 61  aattcttatattatgttcagtttgttttattaggtttaaaattaagccaaagtgtaattc 120
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 261 aattcttatattatgttcagtttgttttattaagtttaaaattaagccaaagtgtagttc 320

                                                                       
Query: 121 tcatcatctaccactttaactcattgttttattatttacgtttaaatattttctttagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatcatctaccactttaactcattgttttattatttacgtttaaatattttctttagga 380

                                                                       
Query: 181 attttttattttgttattctttacaaagttgtgcatttattacaaacatctttgtaaaga 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttttattttgttagtctttacaaagttgtgcatttattacaaacatctttgtaaaga 440

                                                                       
Query: 241 gtaactgaaatgaaacaattttattcttgcttctttacttgttttttgtattctttttgg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaattgaaatgaaacaattttattcttgcttctttacttgttttttgtattctttttgg 500

                                             
Query: 301 atttctggtacatttgtttcttgtctcatgtcat 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 atttctggtacatttgtttcttgtctcatgtcat 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)