BAC Information

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BAC

Clone NameMSMg01-112E20
Chromosome14 (Build37)
Map Location 109,382,333 - 109,382,840
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668757, EG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112E20.T7 (MSMg01no112_e20.b1)MSMg01-112E20.TJ (MSMg01no112_e20.g1)
ACCAG324748AG324749
length735734
length of high quality
(start - end)
511 (46 - 556)429 (74 - 502)
definitionCHROMAT_FILE: MSMg01no112_e20.b1 PHD_FILE: MSMg01no112_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:25 2005CHROMAT_FILE: MSMg01no112_e20.g1 PHD_FILE: MSMg01no112_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAAGCCGCGG
AATTCAATGAATTTTACATTATAAATGTGTATGTTGGAGGAATGATTCCT
AAAGTAAAGCTAGAAACGGTGTAAAAGTCATATCGTAGTGATGATAGCTA
ACAAACTGAATGACACAAACAGGAAAGCATATATGTAAAAAGAAGTGTTT
GTATATATGCATACACACACTTAGTTTTACATATAAATATGGTAAAACTG
CCACGTATATTGTATATACAATATACATAAACACACACACATATACATGC
ATACATACATATATATGCCAATTACCAACAGCAAAAGAAATTATTGTGCT
TGAAGTTTTATGAGAAATCTCACACTATTGAATACACATATATTTTGCAT
AAAATTATTGAAAATGTTAGACTATTTAGAATATTAAATATTCTAATAAA
ATATTGGAAATTTAATTCTTGGAAAAATTAAAATAAATACTTCTAATTGA
AATGCTTGATGTCATTTTATTTACTTAGCCGATTTTTCTGCTTATAATGC
TTTTCAGCACAATAAAAACACATTTTTAAATCTAAAATACGCACCAATTT
GCTCTGAAGTTTTTCTCTTACAGATTACTAAGCATGCAAGTTAATAGCAG
ACTGATTGTCAATATGGTACAATGTATGCGCTTGCCTTGAGATCCTTTTG
TAATAGCTTCATGGCAATCAGAGCAGTTTCCATTT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGGTCTTACCACGTTCCCCATCATC
CTGAAGCAGCTGGTCTGATAGAAAGATGGAATGGCCTTTTGAAGACGCAG
TTACAGCGCCAATTAGGTGGTAACAGCTTGGAAGGCTGGGGTAGAGTTCT
TCAGAAGGCAGTATATGCTTTGAATCAGCGCTCGATATATGGTACAGTTT
CACCCATAGCCAGGATTCATGGGTGCAGGAATCAAGGGGTGGAAAACGGA
ATAGTTCCACTTACTATCACTCCTAGTGACCCTCTAGGAAATTTTTTGCT
TCCTGTCCCCATAACTCTAGGTTCTGCTGGCCTAGAAGTTTTGGCTCCAG
AGAGGGGAGTGCTCCTACCAGGAGCTACAACAAACATTCTATTGAACTGG
AAACTCAGACTTCCCCCTGGTCATTTTGGGCTTCTAATGCCCTTAAACCA
ACAGGCTAAATAAGGAATAACAGTGTTAGGAGGGGTGATAGATCCAGATT
TACCATGGGGAAATTGGATTACCTCTTCCCAATGTTGGTAAGCCAGATTA
TGTCTGGAGCGTAGGAGACCCCTTAGGGTGTCTCTTAGTATTACCATGTC
CTGTCGATAAACTCAACGGGAAACTACCACAGCTCTATTCCACCCCGGAT
GACAACCGACACATACCCCTTCGGATTGAATGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_e20.b1 MSMg01no112_e20.b1 CHROMAT_FILE:
MSMg01no112_e20.b1 PHD_FILE: MSMg01no112_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:25 2005
         (511 letters)



>mm_chr14_109382130_109383040
          Length = 911

 Score =  872 bits (451), Expect = 0.0
 Identities = 492/511 (96%), Gaps = 11/511 (2%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcaatgaattttac---attataaatgtgtatgttggaggaatgattcctaaagtaaagc 65
           ||||||||   |||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tcaatgaa---tacgaaattataaatgtgtatgttggaggaatgattcctaaagtaaagc 260

                                                                       
Query: 66  tagaaacggtgtaaaagtcatatcgtagtgatgatagctaacaaactgaatgacacaaac 125
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaagctgtgtaaaagtcatatcgtagtgatgatagctaacaaactgaatgacacaaac 320

                                                                       
Query: 126 aggaaagcatatatgtaaaaagaagtgtttgtatatatgcatacacacacttagttttac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaagcatatatgtaaaaagaagtgtttgtatatatgcatacacacacttagttttac 380

                                                                       
Query: 186 atataaatatggtaaaactgccacgtatattgtatatacaatatacataaacacacacac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atataaatatggtaaaactgccacgtatattgtatatacaatatacataaacacacacac 440

                                                                       
Query: 246 atatacatgcatacatacatatat-----atgccaattaccaacagcaaaagaaattatt 300
           ||||||||||||||||||||||||     |||||||| ||||||||||||||||||||||
Sbjct: 441 atatacatgcatacatacatatattatatatgccaatcaccaacagcaaaagaaattatt 500

                                                                       
Query: 301 gtgcttgaagttttatgagaaatctcacactattgaatacacatatattttgcataaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgcttgaagttttatgagaaatctcacactattgaatacacatatattttgcataaaat 560

                                                                       
Query: 361 tattgaaaatgttagactatttagaatattaaatattctaataaaatattggaaatttaa 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattgaaaatgttagaatatttagaatattaaatattctaataaaatattggaaatttaa 620

                                                                       
Query: 421 ttcttggaaaaattaaaataaatacttctaattgaaatgcttgatgtcattttatttact 480
           ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 621 ttcttggaaaaattaaaataaatacttctaattgaaatgtttgatgttattttatttact 680

                                          
Query: 481 tagccgatttttctgcttataatgcttttca 511
           |||  ||||||||||||||||||||||||||
Sbjct: 681 tagttgatttttctgcttataatgcttttca 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)