BAC Information

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BAC

Clone NameMSMg01-112K10
Chromosome14 (Build37)
Map Location 16,923,805 - 16,924,168
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc3b, LOC667205, 1700062C10Rik
Downstream geneLOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb, Tpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112K10.T7 (MSMg01no112_k10.b1)MSMg01-112K10.TJ (MSMg01no112_k10.g1)
ACCAG325005AG325006
length720725
length of high quality
(start - end)
244 (65 - 308)441 (74 - 514)
definitionCHROMAT_FILE: MSMg01no112_k10.b1 PHD_FILE: MSMg01no112_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:51 2005CHROMAT_FILE: MSMg01no112_k10.g1 PHD_FILE: MSMg01no112_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCCGCAGTGCCGCGGAATTCTAACT
CATTCCCAAAAAAATTAAGAAAAAAATCTGGCATGTGGAGATTGATGTAG
GGTCTGTGAAGGGTTGATGAGGCTATGGCACTTGTGAAGGCATAGAAGAC
TGGCTTGCCTACCACAGCTGCTATTCCATGAATTGCATATTGAATTTATG
GATTTGGAGAATTTTTTTAATATTATTCCTTTGCTTTTAGTGAGCTTGTA
ATTTTAAAGAACCCATGAAGTGATATCACTGGAAAGCTTTGCCTCAAGGA
ATGGCTAATATGCTTTCTTTATGTAAAAATATTTGTAGCTGCTTCAATAA
AATAAGTTGGCACTTGGAATCTTCCAGTGTATATTCATTATATGGATAGT
ATTTTATTAACTGATGTTTCTGAAGGTGTTTTACTACAAGCCCTTGCTTT
TATAAAACAAGCCTTAAATTTTGGGGGAAGTTGTTGTTCCAGAGAAGTTT
CATAGGCAATATCTTTCTCAATGTTTGTAACATCAGTTATATCCTAAACC
AATTGTGACATATACCATTCACATAACAAGATAATTTATGTACTTTAAAT
GATTTTCACAAGTTGCTAGGAAATATTAATTCGTTAAGACCTCATCTTAA
TCTTACTACAGGACAACTTACAGCTCTGTCTGATATTCTCAAGGGGGATG
CAAATCCTAATCCCCCTCCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTATTCCTTGGTATTGGCTGTGAGGG
TTAGTCAGGACTTTTTTCATGTCCAGACTGTTTCTGGAACCCAGGGTGGA
CTCCTATCTTAGTTACGGTTTCTATGACTATGATTAAGCATCATGACCAT
AAATAACTTGGGGAGGAATAAGTATATTCTTCTTACAGTTCTCAGGTCAC
TCTCACTGAGGGAGTCACAGCAGGAACCCAAGTCAGGTGTGAGGAGGTAG
GAACTGAACCACAGGCCATATAAGAGTGCTGCTTCTTGTTCACATTGGCT
ATACAGGCACAATCATCTCTAAACAGCCTGATTTTGGTCTGTACTCTGGA
GACAAAATACATCTTTGTGCTGTTTGATTCTGTTATTGGAAGCTTTTGTA
TTAGTCAATGGAGACTAAATCATGCTGCATAGATAGACTCTTTTAGCAGC
GTAAATCTTTTGGATTGGCAAACGACCATCACTCCACAGAAAGAATATGT
TTTAATCCCTGCTCAGACGCGACATAGATATGTATGGAAAATTTAGTTTT
CGCCGATGGTAGAGCCATGATCTGCTCAGAATGATGACAGGTCAAGCCTT
GAAGCTGCACACTCCCAGAGACAAATTGCTGGGCACGCCTATAGCGCACG
TTCCCCGGTACTTTGTTTTCCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_k10.g1 MSMg01no112_k10.g1 CHROMAT_FILE:
MSMg01no112_k10.g1 PHD_FILE: MSMg01no112_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:52 2005
         (441 letters)



>mm_chr14_16923328_16924168
          Length = 841

 Score =  646 bits (334), Expect = 0.0
 Identities = 358/368 (97%), Gaps = 6/368 (1%)
 Strand = Plus / Minus

                                                                       
Query: 76  gactcctatcttagttacggtttctatgactatgattaagcatcatgaccataaataact 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gactcctatcttagttacggtttctatgactatgattaagcatcatgaccataaataact 782

                                                                       
Query: 136 tggggaggaataagtatattcttcttacagttctcaggtcactctcactgagggagtcac 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tggggaggaataagtatattcttcttacagttctcaggtcactctcactgagggagtcac 722

                                                                       
Query: 196 agcaggaacccaagtcaggtgtgaggaggtaggaactgaaccacag-gccatataag-ag 253
           ||||||||||||||||||||||||||||||||||||||||||||||  ||    ||| ||
Sbjct: 721 agcaggaacccaagtcaggtgtgaggaggtaggaactgaaccacagaacc----aagaag 666

                                                                       
Query: 254 tgctgcttcttgttcacattggctatacaggcacaatcatctctaaacagcctgattttg 313
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 665 tgctgcttcttgttcacattggctatacaggcacaatcatctctaaacagtctgattttg 606

                                                                       
Query: 314 gtctgtactctggagacaaaatacatctttgtgctgtttgattctgttattggaagcttt 373
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 605 gtctgtactctggagacaaaatacatctttgtgctgtttgagtctgttattggaagcttt 546

                                                                       
Query: 374 tgtattagtcaatggagactaaatcatgctgcatagatagactcttttagcagcgtaaat 433
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 545 tgtattagtcaatggagactaaatcatgctgcaaagatagactcttttagcagcgtaaat 486

                   
Query: 434 cttttgga 441
           ||||||||
Sbjct: 485 cttttgga 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)