BAC Information

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BAC

Clone NameMSMg01-113C03
Chromosome14 (Build37)
Map Location 54,952,779 - 55,093,158
singlet/doubletdoublet
Overlap geneLOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10
Upstream geneLOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819
Downstream geneRem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113C03.T7 (MSMg01no113_c03.b1)MSMg01-113C03.TJ (MSMg01no113_c03.g1)
ACCAG325357AG325358
length708708
length of high quality
(start - end)
574 (45 - 618)330 (69 - 398)
definitionCHROMAT_FILE: MSMg01no113_c03.b1 PHD_FILE: MSMg01no113_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:29 2005CHROMAT_FILE: MSMg01no113_c03.g1 PHD_FILE: MSMg01no113_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,092,840 - 55,093,158)(54,952,779 - 54,953,108)
sequence
TTGCGGCCGCTAAACGACTCCTATTTCGAGAGGACCGCGGAATCACTTTG
TAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAA
GTGCTGGGATTAAAGGCACCACGCCCGGCTGCTCCTTAGCCTTTTGAAAC
ATCTCCTCCCTTTCCCCCTAGACAAGATTTCTCTGCAGATCCATGGCTGT
CCCGGAACTGTAGACCAGGCTGGCCTCAAACTCAGAGATCTGCCTGCCTC
TGCCTCCAAAGATTAAAGGATGTGTACTACCACCAACACCGCTACCCTGC
ACCTTTTGGAAAATTTTTAAAAAATATAAATTTCTTTATTATGTATAGCG
TTCTACCTCATGTATACATGTACACTAGAAGAGGGCATCAGATCTCATTA
CAGACGCCCGTGAGACACCATGTGGTTGCTGGGAATTGAACTCAGGACCT
CTGGGAGAGCAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCCCC
AGGGAAATCTTCTATTTCAGATTTGTGTGTATGTCATGTAGGTTCCTACA
GAGACCAGAAGGTATCAAATCCCATGGACCTTGAGATATTGGCACTTGTG
ATCCGAGTGTGATCTGAGGGCCTCTGGAAGAGCAGCAACCACTCTTAACT
TCTGAGGGACCTGTCCAGCATCCCTCTCCCAACGTGCGAGTATGTGAGTG
AGTGTGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATTGACATACACTGTAAAGACTGGACGCAGA
CTATTGCTTCTCAGGTTTATGTTGAATAATACAAAGATTGAAGACCTGAG
GGAGGACCCCACTTCTTTCCCAGATATCTCCTAAGACTCTTGAGACATTA
ACTTGGTTCTTAGCAAATATGTCCTACCTTACAGTTTTAGCTTATCCATT
GTAATCTCCCTGGAACTGTCCTGTGCCCTCATTTAGGTTCCTTAGGGACT
TTTTTGAAAATATAGCTTCAACCAAAAAAAATCCCGTCTATACAAGAAGC
ACCATTCTCTCAAAAGGGAAGAAACGTAATTCATTCTGTAATCAAATATA
AGTGACCGCGCTCCGGGGCGCAGATTGTGGTTACCCTGAATTCCACAATC
CCAGGGGATAGGTATTTCATGAAGTTTTTAATAGGGAAGGGATGAAAAAC
TCTTTAAAGACATTGGTGGGGACAGTGGGGAGGTATTGGGCAGGCAACTG
GGAGAAACTCTGATATAGGGCTCAGACGTTATCTGGGGACGTTCTTAGGG
TTTGACTCTTGTGGCGGGCTAACTATTATACTGGACAGGGCTGGGGGGGA
GAACGCCCCCCCCCCCCTCGGGAGGGGGAAGGAAGATTATTATTAGACCG
GTGGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_c03.b1 MSMg01no113_c03.b1 CHROMAT_FILE:
MSMg01no113_c03.b1 PHD_FILE: MSMg01no113_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:29 2005
         (574 letters)



>mm_chr14_55092185_55093158
          Length = 974

 Score =  586 bits (303), Expect = e-171
 Identities = 315/319 (98%)
 Strand = Plus / Minus

                                                                       
Query: 256 caccttttggaaaatttttaaaaaatataaatttctttattatgtatagcgttctacctc 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 caccttttggaaaatttttaaaaaatataaatttctttattatgtatagcgttctacctc 915

                                                                       
Query: 316 atgtatacatgtacactagaagagggcatcagatctcattacagacgcccgtgagacacc 375
           ||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||
Sbjct: 914 atgtatacatgtacactagaagagggcatcagatctcattacagatggttgtgagacacc 855

                                                                       
Query: 376 atgtggttgctgggaattgaactcaggacctctgggagagcagtcagtgctcttaacctc 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 atgtggttgctgggaattgaactcaggacctctgggagagcagtcagtgctcttaacctc 795

                                                                       
Query: 436 tgagccatctctccagcccccagggaaatcttctatttcagatttgtgtgtatgtcatgt 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tgagccatctctccagcccccagggaaatcttctatttcagatttgtgtgtatgtcatgt 735

                                                                       
Query: 496 aggttcctacagagaccagaaggtatcaaatcccatggaccttgagatattggcacttgt 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aggttcctacagagaccagaaggtatcaaatcccatggaccttgagatattggcacttgt 675

                              
Query: 556 gatccgagtgtgatctgag 574
           |||||||||||||||||||
Sbjct: 674 gatccgagtgtgatctgag 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no113_c03.g1 MSMg01no113_c03.g1 CHROMAT_FILE:
MSMg01no113_c03.g1 PHD_FILE: MSMg01no113_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:29 2005
         (330 letters)



>mm_chr14_54952579_54953308
          Length = 730

 Score =  630 bits (326), Expect = 0.0
 Identities = 329/330 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattgacatacactgtaaagactggacgcagactattgcttctcaggtttatgttgaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattgacatacactgtaaagactggacgcagactattgcttctcaggtttatgttgaata 260

                                                                       
Query: 61  atacaaagattgaagacctgagggaggaccccacttctttcccagatatctcctaagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacaaagattgaagacctgagggaggaccccacttctttcccagatatctcctaagact 320

                                                                       
Query: 121 cttgagacattaacttggttcttagcaaatatgtcctaccttacagttttagcttatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgagacattaacttggttcttagcaaatatgtcctaccttacagttttagcttatcca 380

                                                                       
Query: 181 ttgtaatctccctggaactgtcctgtgccctcatttaggttccttagggacttttttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ttgtaatctccctggaactgtcctgtgccctcatttaggttccttagtgacttttttgaa 440

                                                                       
Query: 241 aatatagcttcaaccaaaaaaaatcccgtctatacaagaagcaccattctctcaaaaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatatagcttcaaccaaaaaaaatcccgtctatacaagaagcaccattctctcaaaaggg 500

                                         
Query: 301 aagaaacgtaattcattctgtaatcaaata 330
           ||||||||||||||||||||||||||||||
Sbjct: 501 aagaaacgtaattcattctgtaatcaaata 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)