BAC Information

Click to search

BAC

Clone NameMSMg01-113I03
Chromosome14 (Build37)
Map Location 108,516,840 - 108,517,183
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneEG668761, Slitrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113I03.T7 (MSMg01no113_i03.b1)MSMg01-113I03.TJ (MSMg01no113_i03.g1)
ACCAG325627AG325628
length714709
length of high quality
(start - end)
344 (62 - 405)241 (64 - 304)
definitionCHROMAT_FILE: MSMg01no113_i03.b1 PHD_FILE: MSMg01no113_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:57 2005CHROMAT_FILE: MSMg01no113_i03.g1 PHD_FILE: MSMg01no113_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCGCTAAACGACTCCTATTTCGAGAAGAGCCGCGGAATTCAATG
AATGACATAGAGTGGGCTTATTTCAACTGCAGAGCATTAATATGTTCTCT
GATATAGCCTACTGCTATGGAATTGCTTACAAAAAAAGGTGCTCAGGTTA
TTTTTAAAGTCATTTTTATTCTATGTGCTCTTGCTCTTTTGACAAAAATG
GGAAGGAAAGCAATTTTGAACCTTTTAAATGATACACCTATTGCAATATA
ATAGGTAGCATCACACTGTTAAGAGTAATATCAAATCCCATATCAGGTCA
GCTATTACCTTTTTATTTAGTTCAAAATGACCTTAGAGAATGGGCTCCCA
CACTGTGCAGAGTCACAGACAGTAACCTAGCTTTTAAAATGCTGTTTATA
TAGTGTACTTCACTTCGTTTGATGAAGTGTCAACTGGATCTTACTGAATT
GACAAATAAATACAATTGCTACTAAAAACACTATCATGATTCATCTTTAC
ATTTTATCAGGCAAACATTACTTTTTCATTTGTATAAAAAAAGCTTTAGA
GCACGATATAATATACTTCTCATATCTTTATTGATTATTTTTACAAAGAG
CATATTTATGAATATCATACCCGTGATTCTTTTTCCAAAGTAGAATAATA
ACATTTGAGTTTTTCCATATGTATGAAGAACTTAAATTGCGTCAGTAACT
ATTACTGCCTCAAG
ATGTGTTAGGCTGGCGGCGCCTGGTTCCTAAAXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATAATTCTTATAGACGGAAATTATTTTCATGGGGCAT
AGGCCCTAACATTTTGATCAGAATAAATTTAATATCTTTCCAATTTGAAC
AAGAATCATGTTTGTTTTTCTTTTTTTTTTCTTTTTCTTTTTTTTTTTGT
TTTGTTTGTTTGTTTGTTTTTGTCAATACAAAACTTCAAGGTAAACTAGC
AATATAGTTAAATTAGCAAAAAAAAAAAAAGCTGATGATGCTTTTTTCAA
AAGGTAGAGACATGAAATAACAGTTATATATGAGAGAGATTTAATAAATT
AACACTGAAAACTTGAAAACTCTCCTTGCCATTTAAACACAAAGCTACCA
GGCATCTCCAAACAATAATAACAAGTTAAGCCAGGTAAAATATTTCTTTT
TTAGAAAGGCAGATATTAGTCATAGAGATAAGGGTATGTGCAGGATGTAT
GAGATGCGCAACAGTCGAAGGGTATATGGGGGAATAAAATTTGGAGTGCA
AAAAAACAAATGAAAATAAAATCCCTATATTGGGTTTATGACAAATAATA
AATGTAAATAAAATTTCAAATATATATCACAAATTCCCAAATACACGAAT
GTGGTCCTCTTTTGTGCGTTGCGAGTTAATGATGATATTGATGTCTGTGT
TTCCATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_i03.b1 MSMg01no113_i03.b1 CHROMAT_FILE:
MSMg01no113_i03.b1 PHD_FILE: MSMg01no113_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:57 2005
         (344 letters)



>mm_chr14_108516640_108517383
          Length = 744

 Score =  665 bits (344), Expect = 0.0
 Identities = 344/344 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgggcttatttcaactgcagagcattaatatgttctctgatatagcctactgctatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgggcttatttcaactgcagagcattaatatgttctctgatatagcctactgctatgga 260

                                                                       
Query: 61  attgcttacaaaaaaaggtgctcaggttatttttaaagtcatttttattctatgtgctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgcttacaaaaaaaggtgctcaggttatttttaaagtcatttttattctatgtgctct 320

                                                                       
Query: 121 tgctcttttgacaaaaatgggaaggaaagcaattttgaaccttttaaatgatacacctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctcttttgacaaaaatgggaaggaaagcaattttgaaccttttaaatgatacacctat 380

                                                                       
Query: 181 tgcaatataataggtagcatcacactgttaagagtaatatcaaatcccatatcaggtcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcaatataataggtagcatcacactgttaagagtaatatcaaatcccatatcaggtcag 440

                                                                       
Query: 241 ctattacctttttatttagttcaaaatgaccttagagaatgggctcccacactgtgcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctattacctttttatttagttcaaaatgaccttagagaatgggctcccacactgtgcaga 500

                                                       
Query: 301 gtcacagacagtaacctagcttttaaaatgctgtttatatagtg 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcacagacagtaacctagcttttaaaatgctgtttatatagtg 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)