BAC Information

Click to search

BAC

Clone NameMSMg01-113N07
Chromosome14 (Build37)
Map Location 68,476,879 - 68,477,307
singlet/doubletsinglet
Overlap geneDock5
Upstream geneDpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1
Downstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113N07.T7 (MSMg01no113_n07.b1)MSMg01-113N07.TJ (MSMg01no113_n07.g1)
ACCAG325866AG325867
length690717
length of high quality
(start - end)
433 (65 - 497)332 (70 - 401)
definitionCHROMAT_FILE: MSMg01no113_n07.b1 PHD_FILE: MSMg01no113_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:23 2005CHROMAT_FILE: MSMg01no113_n07.g1 PHD_FILE: MSMg01no113_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACATCAAAATTGCGGCGCTAAACGACTCCTATATCGAGAGATCCGCGGAA
TTCTGCCAACTACCAGCTGATGCAAATGTTCTGAGCGGCCGGGCTAGGCT
ATGTTTCATAATTTAGGTGAAGTAAATGCATTTCTTGTTGTCCTTTCTTA
TTAGCATATATTATTGCACAGAATGGCAGGCTTTCTTGAAACACTGGCTT
GTGAAACTTTCAACTCTGGAGAGTTTATAATGATGTAATCACAAGTTCAG
GAACATCTGCATTTGCTGACTCAGTACTTTGAACACAGTAAACTGGGCAT
CCCGCCTTTCACTGGCAGATCCAGTTAGAACAGCACTACTTTGCCTTTAC
AAGTGACACTCCGTGGCTGCCCAGAAATGGCCCGCTGGGAAGAGGATTCC
TCTGGGGGGGGGGGCCAGAGAAAAATATTCCAAGTGATGGGTCTACTGTG
GAAGACCCATGAGAACTTGAGCACATCTCTACCTCTTGTCTTAAAATGTG
TGTTGAAACTTCTCAATCATGTCTCTCTAGTTCAGAGGTTCCAGGATTTT
GGGACAGCCTCCCTGGCACCAGCCATGGAATCGAGTTCTACTTCTTAATT
CTCTCTTCCTGTTTTGAGGGTCCTGCTTTCCTCAGGCGCCACAGAGTCCT
TGCTTTTGCGGGAAAATGACACGGGCAAGAAATGAATACG
TGATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGACAGCCGAGGCCACAAAGAAAAATCCT
ATCTCAACCAAACCCACAACAAACAAACAAACAAACAAAAAACAAGTGAG
AGAGAGAAAGAGACTGAGAGACAGAGACACACACACACACACAGAAAGAG
AGACAGGAAAAGCAGAGATAGATAGAGAGAGGGAGAGGGAGAGAGAGGCT
GAGAGACTGCGAGATTGAGAGATTTTTTTTTCCCTCATGGGCTTGGATAT
TTGAATACTTGATCTTGGTCCCTGCTTAGGGGTGCTATTTGGGTAGGATT
AGGTGTGACCTTGCTGGAATAAATACACCAACGGGGGTGGGCTGTGAGGT
TTCAAAGCCTTGCCACAGCCCCAGGTTGTTCTCTCTACTTCCTGCACGCT
CCCAGCTTCTGTTCTTACCAACATGCCTTCACTGCCTCCATGGAACCATA
GACCAAATAAACTCTATCGCAACACGTTGCCTTGCTCATGAAACCCTTGC
CTCATGGTTGAGCAAGGAACTAAGACGATCCTCGGGGCTGTGCGCGGACA
CCCACCCAACGGAAAATAGGTGGTCGGACATCCAAAATTCTTGTCCCCCT
TGTTATATGCGACATAAAACGTTGGGTACAAAGGGGATCTTGTGGAGGGG
CGCCTCCATGCGCCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_n07.b1 MSMg01no113_n07.b1 CHROMAT_FILE:
MSMg01no113_n07.b1 PHD_FILE: MSMg01no113_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:23 2005
         (433 letters)



>mm_chr14_68476679_68477507
          Length = 829

 Score =  758 bits (392), Expect = 0.0
 Identities = 422/434 (97%), Gaps = 6/434 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgatgcaaatgttctgagcggccgggctaggctatgtttcataatttaggtgaagta 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 agctgatgcaaatgttctgagcggccaggctaggctatgtttcataatttaggtgaagta 260

                                                                       
Query: 61  aatgcatttcttgttgtcctttcttattagcatatattattgcacagaatggcaggcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgcatttcttgttgtcctttcttattagcatatattattgcacagaatggcaggcttt 320

                                                                       
Query: 121 cttgaaacactggcttgtgaaactttcaactctggagagtttataatgatgtaatcacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgaaacactggcttgtgaaactttcaactctggagagtttataatgatgtaatcacaa 380

                                                                       
Query: 181 gttcaggaacatctgcatttgctgactcagtactttgaacacagtaaactgggcatcccg 240
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 381 gttcaggaacatctgcatttgctgactcaatactttgaacacagtaaactgggcatcctg 440

                                                                       
Query: 241 cctttcactggcagatccagttagaacagcactactttgcctttacaagtgacactccgt 300
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 441 cctttcactggcagatccagttagagcagcactactttgcctttacaagtgacattccgt 500

                                                                       
Query: 301 ggctgcccagaaatggcccgctgggaagaggattcctctggggggg-ggggccagagaaa 359
           |||||||||||||||||||||||||||||||||||||||||||||| ||||   | ||||
Sbjct: 501 ggctgcccagaaatggcccgctgggaagaggattcctctgggggggagggg---gggaaa 557

                                                                       
Query: 360 aatattccaagtgatgggtctactgtggaagacccatgagaacttgagcacatctctacc 419
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 --tattccaagtgatgggtctactgtggaagacccatgagaacttgagcacatctctacc 615

                         
Query: 420 tcttgtcttaaaat 433
           ||||||||||||||
Sbjct: 616 tcttgtcttaaaat 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 829
Length adjustment: 9
Effective length of query: 424
Effective length of database: 820
Effective search space:   347680
Effective search space used:   347680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)