BAC Information

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BAC

Clone NameMSMg01-114D05
Chromosome14 (Build37)
Map Location 122,632,474 - 122,632,908
singlet/doubletsinglet
Overlap geneClybl, 1700108J01Rik
Upstream geneFarp1, Stk24, Slc15a1, LOC100043577, Dock9, LOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710
Downstream geneEG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114D05.T7 (MSMg01no114_d05.b1)MSMg01-114D05.TJ (MSMg01no114_d05.g1)
ACCAG326141AG326142
length780705
length of high quality
(start - end)
---435 (75 - 509)
definitionCHROMAT_FILE: MSMg01no114_d05.b1 PHD_FILE: MSMg01no114_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:50 2005CHROMAT_FILE: MSMg01no114_d05.g1 PHD_FILE: MSMg01no114_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGACGACCGCGGACTT
CTGTATTTATCCCCTCGTCGACCAAACTCTGCTCTTAGCCCTTCCTTCCT
TTCGGCTTTTACAACTATATCACTACTCTTATTATTATTATTATTATCAT
TATTATTAGTACGTCGCACTCGTAGCACCAGCCCTACCCCCCCCCCCCCC
CCCCCCCCTCCCCGCCTCCCCTCCCCTCCCCCCTCCCCCCCCCTCCCTCC
CCCCCCCCCCCTCTCCCCCCCCCCTTCCCCTCTCCCCTCGCCCGCCCCCC
CCCCGACCCCCCAANACCCCCCCCCCCCTCCCCTCCCCCCCACGCGCCCC
CCCCCCCCCCCTCCCCATCGCCTCCCACCCCCTCTCCCCCCCCCCCCACC
TCCGCCTTCCCTCCGGGCCTCTCCCGGCCCGCCCCGTCCCCCCCGCCCTT
TTTCCCTCTCCCCCCCCCCGTCCCCTCCGCGCCCCGCCCCGCCCCCCCCC
CCCCTCCGCTCCCCCCCGCCCCCCCCCCCCGCCCCTCTTCTCCCCCCCCC
CCTCCCTCCCCCCCCCCCCCACCCCTCCCCTCCCCCCACTCCCCCCCCTC
CCCCTTCCCCCCTCCCCCTTCTCCCCCCCCACCCCCTCTCCCCCCCCCCC
GCGCCTTCCCCGCCCCTCGCGCCCCCCATCCGCTCCCCCGCTCCCCCTTC
CTTCCCCCGCCTCCCTTCCCCCCCCCCCTCCCCCTCTTCTCCCCCTCCCC
GCCCCCTTCTGTCCCCGTCCGCTCCTCCCG
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCGCCACCCTGACCAGCGAGCCCAGAT
GGCGCTTAAATCTGTCACTCTTTAACGACCCTACTGTTTTTTAAAAATAT
TTTTATATTGAGCTCATTCAGTTTAATCTGAGAGATTAATCATTTCCAAG
ATCTGTCCGGGGAGGGCTGGCTGAGGGCTTTCTCTTGCCAGAACGGAAGC
AGGAAGGATGGCAGAGGACAGGACCTACCTGCTAGCCGAGTCCTGGACTG
GAGGCCCCTGTGGGCTTTGGGACATTCACAGACAGCAGGGTTGAGAAGCC
CACCCGGGGCGTAGTAGCAGTGGGGCTGAGGGAGAAAGGAACGGACATTT
GGGAAAGGCCTGGGGGGTGGAGGTGAATACTGACGCATCCAGAAAAGCCG
TTGCTGTTGCCAACCTCCGCGTTCTGCAAGGGGTCTGGAACTGGCTGGGT
GATGCCGGGATGGCCCTCACTACAAAGGGTTGACCCGGTGGGTGTACCAC
CTGGAGCAGACCCTCCGGTGGAAGAACCTCTCCAAGATGGTTCTAGAAAC
AATCCGCTTTACACTGGGACTCTCGTCAATCTTATAGGTCTTCCTCCCAA
GGGCTCCCATCCTCCTTTCTTCTTAAATTTTGGGACAGTGATTTGTGCTG
TGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_d05.g1 MSMg01no114_d05.g1 CHROMAT_FILE:
MSMg01no114_d05.g1 PHD_FILE: MSMg01no114_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:50 2005
         (435 letters)



>mm_chr14_122632274_122633108
          Length = 835

 Score =  826 bits (427), Expect = 0.0
 Identities = 433/435 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgccaccctgaccagcgagcccagatggcgcttaaatctgtcactctttaacgaccctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgccaccctgaccagcgagcccagatggcgcttaaatctgtcactctttaacgaccctac 260

                                                                       
Query: 61  tgttttttaaaaatatttttatattgagctcattcagtttaatctgagagattaatcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttttttaaaaatatttttatattgagctcattcagtttaatctgagagattaatcatt 320

                                                                       
Query: 121 tccaagatctgtccggggagggctggctgagggctttctcttgccagaacggaagcagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaagatctgtccggggagggctggctgagggctttctcttgccagaacggaagcagga 380

                                                                       
Query: 181 aggatggcagaggacaggacctacctgctagccgagtcctggactggaggcccctgtggg 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggatggcagaggacagggcctacctgctagccgagtcctggactggaggcccctgtggg 440

                                                                       
Query: 241 ctttgggacattcacagacagcagggttgagaagcccacccggggcgtagtagcagtggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgggacattcacagacagcagggttgagaagcccacccggggcgtagtagcagtggg 500

                                                                       
Query: 301 gctgagggagaaaggaacggacatttgggaaaggcctggggggtggaggtgaatactgac 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgagggagaaaggaacagacatttgggaaaggcctggggggtggaggtgaatactgac 560

                                                                       
Query: 361 gcatccagaaaagccgttgctgttgccaacctccgcgttctgcaaggggtctggaactgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatccagaaaagccgttgctgttgccaacctccgcgttctgcaaggggtctggaactgg 620

                          
Query: 421 ctgggtgatgccggg 435
           |||||||||||||||
Sbjct: 621 ctgggtgatgccggg 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)