Query= MSMg01no114_g17.b1 MSMg01no114_g17.b1 CHROMAT_FILE:
MSMg01no114_g17.b1 PHD_FILE: MSMg01no114_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:06 2005
(241 letters)
>mm_chr14_114860123_114860763
Length = 641
Score = 400 bits (207), Expect = e-116
Identities = 231/245 (94%), Gaps = 12/245 (4%)
Strand = Plus / Minus
Query: 1 ttttccccccaaaataatacaaagtcatgaggaagactttagaaccgggtatggcaggca 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 346 ttttccccccaaaataatacaaagtcatgaggaagactttagaaatgggtatggcaggca 287
Query: 61 agagttcttctgctgatcaattctagaaacactgattttaggagtaaagcctctggcact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 agagttcttctgctgatcaattctagaaacactgattttaggagtaaagcctctggcact 227
Query: 121 ttgtggatttcctttgcttagaaagatattgatttttgcttttgtttgtttgttgttttt 180
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 226 ttgtggatttcctttgcttagaaagatattgatttttgct----tttgtttgttgttttt 171
Query: 181 tcc----atttatttatttatttattgactttatatcctgattgctgaacttacttctgt 236
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 170 tccatttatttatttatttatttattgactttatatcctgattgctga----acttctgt 115
Query: 237 cccta 241
|||||
Sbjct: 114 cccta 110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no114_g17.g1 MSMg01no114_g17.g1 CHROMAT_FILE:
MSMg01no114_g17.g1 PHD_FILE: MSMg01no114_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:06 2005
(636 letters)
>mm_chr14_114802129_114803164
Length = 1036
Score = 1199 bits (620), Expect = 0.0
Identities = 632/636 (99%)
Strand = Plus / Minus
Query: 1 aatattctggtgctgtgtaaaagttcactaattaataatttattcaaaaaatagattatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 aatattctggtgctgtgtaaaagttcactaattaataatttattcaaaaaatagattatt 843
Query: 61 atatttctttcaaaggaaaggaggcagccacttttgtgcaacagtagcatatgttactct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 atatttctttcaaaggaaaggaggcagccacttttgtgcaacagtagcatatgttactct 783
Query: 121 ttacagttctatattgttcagtgaaataacagacataaatgttagagtatgatctcacaa 180
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 782 ttacagttctatattgttcaatgaaataacagacataaatgttagggtatgatctcacaa 723
Query: 181 tgtagcatgcaatctatgtatttccattgctttactagattaatagactaagctaaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tgtagcatgcaatctatgtatttccattgctttactagattaatagactaagctaaattt 663
Query: 241 caatactacttatccaagtaacctaatgaaaacatttaagttcctacagagaaacaacac 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 caatactacctatccaagtaacctaatgaaaacatttaagttcctacagagaaacaacac 603
Query: 301 tgtaacgataggtagttcacagaaatttgtctggacatacagcaaaactaagtgtgaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgtaacgataggtagttcacagaaatttgtctggacatacagcaaaactaagtgtgaaat 543
Query: 361 agcatttaattggaaagaaattctgttttctttcagaattttaatctgcttacctagtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agcatttaattggaaagaaattctgttttctttcagaattttaatctgcttacctagtgt 483
Query: 421 gttttactttttaaaaaaatgtaatttgagagcagtagaaaattttaatcaaatataatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gttttactttttaaaaaaatgtaatttgagagcagtagaaaattttaatcaaatataatg 423
Query: 481 ttctggagatctcattgtgtaaattcaataattagaaatgtcatgttgaaattggtttcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttctggagatctcattgtgtaaattcaataattagaaatgtcatgttgaaattggtttcc 363
Query: 541 caagacccaccagattaaaaccccgcaacttttctccctttacaatgagaacaagtaagc 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 caagacccaccagattgaaaccccgcaacttttctccctttacaatgagaacaagtaagc 303
Query: 601 accaaacatctttgtgcaaaggatggactgaaaacc 636
||||||||||||||||||||||||||||||||||||
Sbjct: 302 accaaacatctttgtgcaaaggatggactgaaaacc 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
