CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGTGAAATGTTTTTTTGTGGAAAAAAAATAAAATTTTTGAGACA
TGATTTTTAGTAACAAACTATATTCCCCAGTCACATACTCACTATATTCG
GAAAGCTTTCTCTGTAAGTTGCAAATTTGTTACATAAGTCAAAAATGCAA
ACACTGACTTGAGAGGGTTTCTTTAATTCTACATTTATACTTCAAAGTTC
AAATAGTATCTTTTGTTAGAAAAGACACAGAACAAATTTACTGATTTTTG
GGTACCACTAAGGAAATAAACAGATTGTACAATTTAAACAGTTGTTGGCA
TTATTCCATCAAATATGCTACAGCTGTAAAAAAGATAGAAATTGCAATGG
CTTATTATGTCAGTTATACTTCTCCCCTTCAGATACAGAATCATTCATTC
AAGTATGAAGTGAGAAGAGTGCACAGTATGGAGATGCATAAGCACCATTT
CAGAAGAGACTAGAGCAGATGGAACTAGTGGGTAAGACTAAAACTGGAGA
GTGAAATCACTGTTTAAAAGAGAAATGCTATAATTGTATTAATTAACAGT
AGATGAAAAAGAAAAAAAAGAAGTCCAATTTCTGGTTATAGAGCAAGCTG
GAAGAAAGCAAACTCTTTAGAAAACACTTGGCATTACTAAATGTGAGTGA
ACATTTTACACTAAGGATAACAAGAACATACCACCATAAACAAGGCTGTC
ATAGATCTTN

TTTTNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCAGAAAAATCACAGATGATTTAAAAAACAAA
CAAAACAAAAAACAGGGTCTCTACATACCCCTGACTGTCCTGTATGTAGC
ACATTATGTAGATCATGTTGGCCTCAAATTCACAAAATCTGCCTGCTTCT
GCCTCTCAAGAGCTGAGATTAAAAATATGTGTCATGATGCCCACCTCAGA
ATCTCTGTCTTTAGGGTTTTTGTTTGTTTGTTTGCGTTTTTTTTTTTTTA
GTTTTATTTAATTTTCAATTCAAGATTCATTCNTTAACTTCATATATGAG
GCCATTGTTATATCCATCCTGTGATCGCGAAAAAGAGAACAGGCTTTAAG
CTGTGGCAGAAGATAATCTATCACCATTATTGGAAAATTTATGTTTGAAC
TTGGAATATATATCATATAGATATGTATATATGTATATGTGTGTACAGAT
ACCGCCATTTACCCGTCTCTCCCTTCTTTTCTTTTTTACTCCTTCTCCTC
CTTCTTATCCCTCCCCCCTTTTTCCCTCTCCCTTCTTCCCTTATCCCTTT
TCCCTTTTCTCTTTCCTTTTCTCATCCCCCCCCACCTTTCCCCCCTCTTT
CTTTTCCCTCCTCACCCATACATCCTTTTTTTTTTCTCCCCCCCTAATCA
TCCCCCCTTCCTTACTATCCTCT

Query= MSMg01no115_h18.b1 MSMg01no115_h18.b1 CHROMAT_FILE:
MSMg01no115_h18.b1 PHD_FILE: MSMg01no115_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:26 2005
         (687 letters)



>mm_chr14_84200405_84201494
          Length = 1090

 Score = 1274 bits (659), Expect = 0.0
 Identities = 678/687 (98%), Gaps = 7/687 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtgaaatgtttttttgtggaaaaaaaataaaatttttgagacatgattttta 64
           |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 889 gaattcatgtgaaatg-ttttttgtgg-aaaaaaataaaatttttgagacatgattttta 832

                                                                       
Query: 65  gtaacaaactatattccccagtcacatactcactatattcggaaagctttctctgtaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gtaacaaactatattccccagtcacatactcactatattcggaaagctttctctgtaagt 772

                                                                       
Query: 125 tgcaaatttgttacataagtcaaaaatgcaaacactgacttgagagggtttctttaattc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgcaaatttgttacataagtcaaaaatgcaaacactgacttgagagggtttctttaattc 712

                                                                       
Query: 185 tacatttatacttcaaagttcaaatagtatcttttgttagaaaagacacagaacaaattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tacatttatacttcaaagttcaaatagtatcttttgttagaaaagacacagaacaaattt 652

                                                                       
Query: 245 actgatttttgggtaccactaaggaaataaacagattgtacaatttaaacagttgttggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 actgatttttgggtaccactaaggaaataaacagattgtacaatttaaacagttgttggc 592

                                                                       
Query: 305 attattccatcaaatatgctacagctgtaaaaaagatagaaattgcaatggcttattatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 attattccatcaaatatgctacagctgtaaaaaagatagaaattgcaatggcttattatg 532

                                                                       
Query: 365 tcagttatacttctccccttcagatacagaatcattcattcaagtatgaagtgagaagag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tcagttatacttctccccttcagatacagaatcattcattcaagtatgaagtgagaagag 472

                                                                       
Query: 425 tgcacagtatggagatgcataagcaccatttcagaagagactagagcagatggaactagt 484
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tgcacagtatgaagatgcataagcaccatttcagaagagactagagcagatggaactagt 412

                                                                       
Query: 485 gggtaagactaaaactggagagtgaaatcactgtttaaaagagaaatgctataattgtat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gggtaagactaaaactggagagtgaaatcactgtttaaaagagaaatgctataattgtat 352

                                                                       
Query: 545 taattaacagtagatgaaaaag-----aaaaaaaagaagtccaatttctggttatagagc 599
           ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||
Sbjct: 351 taattaacagtagatgaaaaagaaaaaaaaaaaaagaagtccaatttctggttatagagc 292

                                                                       
Query: 600 aagctggaagaaagcaaactctttagaaaacacttggcattactaaatgtgagtgaacat 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aagctggaagaaagcaaactctttagaaaacacttggcattactaaatgtgagtgaacat 232

                                      
Query: 660 tttacactaaggataacaagaacatac 686
           ||||||| |||||||||||||||||||
Sbjct: 231 tttacacaaaggataacaagaacatac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1090
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1080
Effective search space:   731160
Effective search space used:   731160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)