BAC Information

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BAC

Clone NameMSMg01-115O03
Chromosome14 (Build37)
Map Location 31,698,988 - 31,699,537
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1
Downstream geneItih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115O03.T7 (MSMg01no115_o03.b1)MSMg01-115O03.TJ (MSMg01no115_o03.g1)
ACCAG327401AG327402
length740714
length of high quality
(start - end)
567 (46 - 612)555 (81 - 635)
definitionCHROMAT_FILE: MSMg01no115_o03.b1 PHD_FILE: MSMg01no115_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:57 2005CHROMAT_FILE: MSMg01no115_o03.g1 PHD_FILE: MSMg01no115_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGACACATACCTAAACATAATAAAAGCAATATATAGCAAGCCAA
CAGCAAATTAAATGGAGAGCAACTAGAAGCAATCCCACTAAAATCAGGGA
CAAAACAAGGTTTCTCACTCTCTCCCTATGTATTCAATATAGTATTTGAA
GTTCTAGCTAGAGCAATTAGACAACAAAAAGAGATCAAGGGGATACAAAC
TGGAAAGGAAGAAGTCAAAATATCCCTATTTGTAGATGATATTACAGTAT
ACACAAGCAACCCCCAAAATTCCACCAGAGAACTCCTAAACCTGATAAAC
AATTTCAGCAAAGTGGTGGAATATAAAATGAACTCAACATATCAGTAGTC
CTCCTTTATACAAATGATAAATAGGCTGAGAAAGAAATTAAGGAAACAAC
ATCCTTGTATAAAATAGTATAAAAGTGTATACATTTATATACAAATAGTA
TAAATATCTTGGTGTAACTCTTACCAAGCAAGTGAAAGATCTGTTGTGAC
AAGAACTTCAAATCCCTGAAAAAAGAAATCGAAGAAGACCTCAGAAGATG
GAGAGATATTCCATGCTCATGGATTGGTAGGATTAACATACTATAAATGG
CCATCCTACCTAAAGCAATCTACAGACTCAATGCAATTCCCAGCAAAATT
CCTATACCAGGGGACTGGAGAGATGGCTCAGTGATTAAAN
NNNNNAACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCCCTGTGCCTCACCTTC
CTGCATAGACTGTCCAACATCACACCTCTAGGCTTAGGGTATGCATCTTT
ACAACTCTAACGTATTGTCAAATTGCAGACCTGTTCGAGAGTCTGCTTGG
CTTGAACCTACAGCCTGGTTATACTAATAGGACCCATGGAGCAGCCTGGT
ATCAGAGAGTGAACAGGGGTTTCTGGACCCAGCATCTTTTGCTCCAAAAA
GTGCCCAATCTTGCTAGTGTCCTCGGATGCGTCTGTGGTCCTCTCGGTGT
CTCAGGGATCCCACGGGCATGCCTACCTACCAGGTTAATATGGCCGTGTC
TCTTCCAGGAAGCCACCTAGGGTATTTTTTCCAGCCCTGGTCTTTCTACG
GAAGCTTATGTTTCCTCCTGGGCTAGACTCATTGAGAGCTTACTGGCCTC
ACTGCTGGGTGCCTCTGGCCCTACACATCATGGTGGATGTCTACGTCAGG
TTGTGACTCTGGAATTCTGAACCTAGCTAGCAGAAGGCCTGCTAATGCCC
AGCTGCCTCTCCCCAGTGTATGTCCTTCTATCAGCAAAGTTTACTGGACA
TAGGTCACTTGTGTCCTTATCTGAGGCCTCTGGGATCTTTTGTCTGTACA
CCTGCATTTCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_o03.g1 MSMg01no115_o03.g1 CHROMAT_FILE:
MSMg01no115_o03.g1 PHD_FILE: MSMg01no115_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:57 2005
         (555 letters)



>mm_chr14_31698788_31699737
          Length = 950

 Score =  980 bits (507), Expect = 0.0
 Identities = 541/555 (97%), Gaps = 5/555 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatccctgtgcctcaccttcctgcatagactgtccaacatcacacctctaggcttagggt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tatccctgtgcctcaccttcctgcatagactgtccaacatcacacctctaggctcagggt 260

                                                                       
Query: 61  atgcatctttacaactctaacgtattgtcaaattgcagacctgttcgagagtctgcttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcatctttacaactctaacgtattgtcaaattgcagacctgttcgagagtctgcttgg 320

                                                                       
Query: 121 cttgaacctacagcctggttatactaataggacccatggagcagcctggtatcagagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 cttgaacctacagcctggttatactaataggacccatggagcagcctggtaccagagagt 380

                                                                       
Query: 181 gaacaggggtttctggacccagcatcttttgctccaaaaagtgcccaatcttgctagtgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 gaacaggggtttctggacccagcatcttttgctccaaaaagtgcccaatcttgctaatgt 440

                                                                       
Query: 241 cctcggatgcgtctgtggtcctctcggtgtctcagggatcccacgggcatgcctacctac 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcagatgcgtctgtggtcctctcggtgtctcagggatcccacgggcatgcctacctac 500

                                                                       
Query: 301 caggttaatatggccgtgtctcttccaggaagccacctagggtattttttccagccctgg 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggttaatatggccctgtctcttccaggaagccacctagggtattttttccagccctgg 560

                                                                       
Query: 361 tctttctacggaagcttatgtttcctcctgggctagactcattgagagcttactggcctc 420
           ||||||||||||||||||||||||||||||||||     ||||||||||||||| |||||
Sbjct: 561 tctttctacggaagcttatgtttcctcctgggct-----cattgagagcttactagcctc 615

                                                                       
Query: 421 actgctgggtgcctctggccctacacatcatggtggatgtctacgtcaggttgtgactct 480
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 616 actgctgggtgcctctggccctacacatcatgatggatgtctacatcaggttgtgactct 675

                                                                       
Query: 481 ggaattctgaacctagctagcagaaggcctgctaatgcccagctgcctctccccagtgta 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 676 ggaattctgaacctagctagcagaaggcctgctaatgcccagctgcctctccccagggta 735

                          
Query: 541 tgtccttctatcagc 555
           |||||||||||||||
Sbjct: 736 tgtccttctatcagc 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 950
Length adjustment: 10
Effective length of query: 545
Effective length of database: 940
Effective search space:   512300
Effective search space used:   512300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)