BAC Information

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BAC

Clone NameMSMg01-116E16
Chromosome14 (Build37)
Map Location 50,416,664 - 50,556,174
singlet/doubletdoublet
Overlap geneLOC667006, Olfr722, Olfr723
Upstream geneLOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik
Downstream geneOlfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116E16.T7 (MSMg01no116_e16.b1)MSMg01-116E16.TJ (MSMg01no116_e16.g1)
ACCAG327708AG327709
length720720
length of high quality
(start - end)
483 (76 - 558)164 (75 - 238)
definitionCHROMAT_FILE: MSMg01no116_e16.b1 PHD_FILE: MSMg01no116_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:30 2005CHROMAT_FILE: MSMg01no116_e16.g1 PHD_FILE: MSMg01no116_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(50,416,664 - 50,417,146)(50,556,011 - 50,556,174)
sequence
NNTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGGGCCTAACGACAACAAAGAGTGAATAAGAGGTGAAA
CAGTGCATTTTAAAAAAGATAATGTAAGTCTACAGTATTTTTTCCTTTTC
TTATGAAAAGAGTTTTAGATAAGATAGAGAAGTAAGTGAATTTGTGTGTG
ATTCTGGAATAAGTGTTTAAAATGTAGAAACATAAACACAGCAAATGCTA
GTGTTTTGAACTTAAAAGCAACTCCTGTGTATAAAAATTTATCAGTCAAG
GGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTG
CTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCATACT
TATCTCCTTGTACTAAGGTCAAATCTAAATGGATCAAAGAACTTCACATA
AAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGGAAAGCCTTGA
AGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTG
CTGTAAGATCAAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTT
CTGCAAGGCATAAGACACCGTCAATAAGACAAAGAGACCACCAACAGATT
GTGAAAGGATCTTTATCTATCCTAAATCATATAGGGGATTATTATCTACC
TATATAAAGAACTTCAGAAG
TTTTTTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTACCAAAAAAATTCTCTCCTCGCAGATAGTTCTGT
CAGATCGCCCCAAGAAGCTGCTGCTGCTTCTTTCCATCTTACTGTTCCTT
ATGTGGTACATATAAAATCCCAGCAAAGTGCTTCTACCTGTATTACCTGT
CTTTCCTGCCTGTAAAGATCCTGTGTGACAGGAGTCTAAGAGCTGTGAAT
CCTACAAATTAACATAAAATTGAAAAGTTCAGAAAAAAAATGTGGTATTT
TCTCAAATGAAAGCTTTTCTAATATTTTTTTTTCACAGAATATTTTCTTC
TTCAAAACTCTATACTTCTTAAACCTTTCTGAATATCTTCCTGCATTAGT
TTCGGTGGATTACACAACAAAAATCCAAATTAGTTCATTGCTCAATTCTG
ACAAGTTGGAGACATGAAATTCAAACCTATTCTTTGAATTTTTTTCTCTG
AAAGGTAATTAAGTTTATTCATCATTTACTGTCCTATGTGCAAACTACCC
AGTGCAACTCAAGCAGAGATGAATAAGTGAGGCGTTACGATCTAAGGAGA
CACTGATATTTATAGTTCCTAGAAATAATAAAAAGACATCTTTTAAGACA
TGATTTAAATATTAAGTGCTTGCAAATTGAAAAAGTCCTAACATTCCTTT
GTAGATCGCTTTCTAACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_e16.b1 MSMg01no116_e16.b1 CHROMAT_FILE:
MSMg01no116_e16.b1 PHD_FILE: MSMg01no116_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:30 2005
         (483 letters)



>mm_chr14_50416464_50417346
          Length = 883

 Score =  934 bits (483), Expect = 0.0
 Identities = 483/483 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaaagagtgaataagaggtgaaacagtgcattttaaaaaagataatgtaagtctacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaaagagtgaataagaggtgaaacagtgcattttaaaaaagataatgtaagtctacag 260

                                                                       
Query: 61  tattttttccttttcttatgaaaagagttttagataagatagagaagtaagtgaatttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattttttccttttcttatgaaaagagttttagataagatagagaagtaagtgaatttgt 320

                                                                       
Query: 121 gtgtgattctggaataagtgtttaaaatgtagaaacataaacacagcaaatgctagtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgattctggaataagtgtttaaaatgtagaaacataaacacagcaaatgctagtgtt 380

                                                                       
Query: 181 ttgaacttaaaagcaactcctgtgtataaaaatttatcagtcaagggagctaaaaccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaacttaaaagcaactcctgtgtataaaaatttatcagtcaagggagctaaaaccatc 440

                                                                       
Query: 241 cagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgt 500

                                                                       
Query: 301 agaagaatgcgaattgatccatacttatctccttgtactaaggtcaaatctaaatggatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaagaatgcgaattgatccatacttatctccttgtactaaggtcaaatctaaatggatc 560

                                                                       
Query: 361 aaagaacttcacataaaaccagagacactgaaacttatagaggagaaagtgggggaaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagaacttcacataaaaccagagacactgaaacttatagaggagaaagtgggggaaagc 620

                                                                       
Query: 421 cttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgta 680

              
Query: 481 aga 483
           |||
Sbjct: 681 aga 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no116_e16.g1 MSMg01no116_e16.g1 CHROMAT_FILE:
MSMg01no116_e16.g1 PHD_FILE: MSMg01no116_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:30 2005
         (164 letters)



>mm_chr14_50555811_50556374
          Length = 564

 Score =  317 bits (164), Expect = 2e-91
 Identities = 164/164 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctctcctcgcagatagttctgtcagatcgccccaagaagctgctgctgcttctttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aattctctcctcgcagatagttctgtcagatcgccccaagaagctgctgctgcttctttc 305

                                                                       
Query: 61  catcttactgttccttatgtggtacatataaaatcccagcaaagtgcttctacctgtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 catcttactgttccttatgtggtacatataaaatcccagcaaagtgcttctacctgtatt 245

                                                       
Query: 121 acctgtctttcctgcctgtaaagatcctgtgtgacaggagtcta 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 acctgtctttcctgcctgtaaagatcctgtgtgacaggagtcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)