BAC Information

Click to search

BAC

Clone NameMSMg01-116O18
Chromosome14 (Build37)
Map Location 29,133,679 - 29,133,932
singlet/doubletsinglet
Overlap geneErc2
Upstream geneArhgef3, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116O18.T7 (MSMg01no116_o18.b1)MSMg01-116O18.TJ (MSMg01no116_o18.g1)
ACCAG328184AG328185
length705703
length of high quality
(start - end)
257 (265 - 521)49 (218 - 266)
definitionCHROMAT_FILE: MSMg01no116_o18.b1 PHD_FILE: MSMg01no116_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:19 2005CHROMAT_FILE: MSMg01no116_o18.g1 PHD_FILE: MSMg01no116_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACTTTNAAATCTATAATTGCGGCGCTAATACGACTCCTATATCCAGAAA
TCCGCGGAATTCCCGTGATTTTCCCAAAATGCTTCAGTGTGTAAAACCCT
CTGCCTATGTTTGAACGTTTTATCTGTGGACCATGTCACACAGCTCCAAT
TCTTCATTTGTATCACAATATATTTACTAGCATAATGATCCCACACCGGA
GATTGCATCCATATTTGTATCAATCAGGTCATAAGTTTACATATGCTTTC
GACAGAGAAAGGTATTCCTTTCTAATGATTTGAGAAGTAAATGCCTGCTC
AATTATAAGATAACAGGAGCTCAATCAACTCATTAGCAAATGTGGCAATA
GATCTCAGGGAACCTTAAATTGTTCTCCTACTGACCCATCTCCTTGAGTG
TTCACAGACAAAGAGTACTACATAAGATCCTTAAAAAAGCACCCTTATCA
ATAGAGATGAAGAGATATTTGTTCATCCCTAAGGCTGACACACCAGGGGG
TTTTTCCCTAAGGAAAGCAGTATAGAATGGAACAGCTGCCCTTTCTGATT
TTGTGAAATAGGGAGATGATAGAGTTCAGGTTCTTGCACACATTTGCACA
CTTAAAAGTACATGTGTTGAGGTGGATAGTCAAGGACAATTATTGCAAAC
ACACACCACAGGATTGCCCATGAGTACGACTTGCTGGGAAGGCATCCCCC
CCAGG
TCCCCNAAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCAGGAATTCTAGGTAAATTCCATGGGTG
ATGTTTAAGAGTAAAAACTGCTACTTGTTACGCAAGCAGTTAGCGTCGGA
GTTCTGTATTGTTCGTGTTAGAACCCTTTAAGCATCTTTTCCTAAGTGCT
CTTGGATTTTCAGTTGCGACTTTTCTCTTTGGTGTTTCCTTTAGACCTTC
ACTGCAATCTTTCTGCATTTATAGCCATGTTCATAACATTTCTAGTGCTT
ATGTGTTTTGTTTTGGTTTTGTTTGGGCTGGCTTGGCGTTGGTATTTTGA
GATAGGGTTTCTCTGTGTATGCCTGGCTATCCTGGAACTCACTCCGTAGA
CCGGACTGGCCTTGAACTCACGGAGATCTACCTGCCTCTGCTGGGACTAA
AGGAAAGGACCACCACTGCCCTACTTGGGCTTGTGTTTTGGATAGGAAAT
AATAGCAATCTTTTCGTACTTTTCTTTGGTTTCAGTGTACAATGATTGTA
TTGTAGAATTACTATAGTCTTATTTTTTTTTTAAATTATGTATTTTATTG
AATGACTATGCACAGATTGTCAGATCTCAGCTTGGTAAGTTTGCCTGGAA
TAACCCGTATGTTCAAACTTTATTACCCCATTCACATACCGAATATGTTG
AGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_o18.b1 MSMg01no116_o18.b1 CHROMAT_FILE:
MSMg01no116_o18.b1 PHD_FILE: MSMg01no116_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:19 2005
         (257 letters)



>mm_chr14_29133479_29134134
          Length = 656

 Score =  447 bits (231), Expect = e-130
 Identities = 249/255 (97%), Gaps = 1/255 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctttctaatgatttgagaagtaaatgcctgctcaattataagataacaggagctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttcctttctaatgatttgagaagtaaatgcctgctcaattataagataacaggagctcaa 395

                                                                       
Query: 61  tcaactcattagcaaatgtggcaatagatctcagggaaccttaaattgttctcctactga 120
           ||||||||  |||||||||||||||||||||||||||||||||| ||| |||||||||| 
Sbjct: 394 tcaactca-aagcaaatgtggcaatagatctcagggaaccttaacttggtctcctactgt 336

                                                                       
Query: 121 cccatctccttgagtgttcacagacaaagagtactacataagatccttaaaaaagcaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cccatctccttgagtgttcacagacaaagagtactacataagatccttaaaaaagcaccc 276

                                                                       
Query: 181 ttatcaatagagatgaagagatatttgttcatccctaaggctgacacaccagggggtttt 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttatcaatagagatgaagagttatttgttcatccctaaggctgacacaccagggggtttt 216

                          
Query: 241 tccctaaggaaagca 255
           |||||||||||||||
Sbjct: 215 tccctaaggaaagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 656
Length adjustment: 9
Effective length of query: 248
Effective length of database: 647
Effective search space:   160456
Effective search space used:   160456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)