BAC Information

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BAC

Clone NameMSMg01-118B18
Chromosome14 (Build37)
Map Location 118,855,270 - 118,940,601
singlet/doubletdoublet
Overlap geneAbcc4
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
Downstream geneCldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118B18.T7 (MSMg01no118_b18.b1)MSMg01-118B18.TJ (MSMg01no118_b18.g1)
ACCAG329070AG329071
length713714
length of high quality
(start - end)
492 (44 - 535)494 (73 - 566)
definitionCHROMAT_FILE: MSMg01no118_b18.b1 PHD_FILE: MSMg01no118_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:51 2005CHROMAT_FILE: MSMg01no118_b18.g1 PHD_FILE: MSMg01no118_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,940,197 - 118,940,601)(118,855,270 - 118,855,763)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAA
TTCCTTTGATTATCTCGGTCTCATTCCATGAGTGTTTCAGTGATGAATTT
TGTCCATTTATTCTCCATCTACCCCTCCGCATTCCTTCATTCTCCCACCA
CCGCCACCGAGAGATGACGCTGTATTGGAAGATAGCATATTTTATTCATC
TGTTGGTTGATGGATATTTGGATTGTTGTCGCGTTTTGTGACCAACCCTC
CTTGTATCAGTATTTATGTGCCACGTATATTTTCATTCCCTTGAGATGAA
AATACCTTGGGTGGGATTTCTGTGCTTCGGGTAGGTGTATGTTTACTAAG
AAAAAAAGAAAACCTACCAAAGAGTTTTCACAGTGCCATTCTACTCACGC
ATCGCATGCACAGTGACTGGGGGAGCTCTGCCTTTGGTAACACATGGGGC
TTAGTGTTACCAGTTGTCTTGATCGGAGCCTTTACTGTAGGTATGGCTGG
TCTCGCTATGGTTTTAGCTTGGGTTTCCCTGATGATTAGCGATGCTGCAC
CTTTTCTTTTTTTTTTTTGGTGCACATTTATCAGCCACTCGGAACTTTTG
CGTGTGCGTGTGAATTTTTTGGTTCAAATCTCTTGGTTACTCTTTGTAAA
TTCATTCTTAAAAATCCTGTTACAGCCTGATTTATTGGAATGCGCGCCTG
TTTAACTCCAATA
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTACACCTTGAGTTCATGTTTTGTTGC
TGTGTGTTTGACTTTCAGTTGTTGCCAAATGTTGTGTGGTTCCTTCCCCC
AGTTGTTATGCCACATCTGTACAGTCACCGCACACAGTTTAAGAATCAGA
GTACAACACAGAACCCAGAGTCTTGAAGCTGGAAGGAATCTTAAACAGTG
AAGTCACTCTTTGGTTTATATGCCAGGGTGTAACAAGAATGGCAGCCAAC
AGTCCAGAGCCAGTTAATCATCTTAACCAAAGTGTTGGACCTGCTCCTGG
CCCAGGGACCACCACACTCTGGACTTCATTTTGTAACGCGAATGAAGTCT
TCCCTACCTGACTTCCCCATCTAACTTTCTTTCAGACTTTCTGCTGATAG
GCTGCCCTAGGTTTCTCTTAGAGTGATGAAACACTCTTCCCCAAGGAGAC
TCCAGGAGAAATGTGGTTATCTGGCTAGCATTGCCAGGCCATAGTTCATC
ATGGAGGGCAGGAAGGGTAAGAATGCAAGGCAGGAACCTGGAAGCAAGAA
CCATTGGGGAACTGCTGAGTGGCTCACTCTCTGAACACAAACCCATGCTT
AGCTAGCATTCTTATGCAGTACATGACTCCCTGCCCAGAGATGCTGTCTC
TCACAGCAGGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_b18.b1 MSMg01no118_b18.b1 CHROMAT_FILE:
MSMg01no118_b18.b1 PHD_FILE: MSMg01no118_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:51 2005
         (492 letters)



>mm_chr14_118940197_118941088
          Length = 892

 Score =  737 bits (381), Expect = 0.0
 Identities = 399/405 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttgattatctcggtctcattccatgagtgtttcagtgatgaattttgtccat 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gaattcctttgattatctaggtctcattccatgagtgtttcagtgatgaattttgtccat 346

                                                                       
Query: 65  ttattctccatctacccctccgcattccttcattctcccaccaccgccaccgagagatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttattctccatctacccctccgcattccttcattctcccaccaccgccaccgagagatga 286

                                                                       
Query: 125 cgctgtattggaagatagcatattttattcatctgttggttgatggatatttggattgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cgctgtattggaagatagcatattttattcatctgttggttgatggatatttggattgtt 226

                                                                       
Query: 185 gtcgcgttttgtgaccaaccctccttgtatcagtatttatgtgccacgtatattttcatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gtcgcgttttgtgaccaaccctccttgtatcagtatttatgtgccacgtatattttcatt 166

                                                                       
Query: 245 cccttgagatgaaaataccttgggtgggatttctgtgcttcgggtaggtgtatgtttact 304
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cccttgagatgaaaatgccttgggtgggatttctgtgcttcgggtaggtgtatgtttact 106

                                                                       
Query: 305 aagaaaaaaagaaaacctaccaaagagttttcacagtgccattctactcacgcatcgcat 364
           |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 105 aagaaaaaaagaaaacctaccaaaaagttttcacagtgccattctactcacacatcgcat 46

                                                        
Query: 365 gcacagtgactgggggagctctgcctttggtaacacatggggctt 409
           |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 45  gcacagtgactgggggcgctctgcctttggtaacgcatggggctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no118_b18.g1 MSMg01no118_b18.g1 CHROMAT_FILE:
MSMg01no118_b18.g1 PHD_FILE: MSMg01no118_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:51 2005
         (494 letters)



>mm_chr14_118855070_118855963
          Length = 894

 Score =  909 bits (470), Expect = 0.0
 Identities = 488/494 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctacaccttgagttcatgttttgttgctgtgtgtttgactttcagttgttgccaaatgt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 cctacaccttgagttcatgttttgttgctgtgtgtttgactttcggttgttgccaaatgt 260

                                                                       
Query: 61  tgtgtggttccttcccccagttgttatgccacatctgtacagtcaccgcacacagtttaa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtggttccttcccccagctgttatgccacatctgtacagtcaccgcacacagtttaa 320

                                                                       
Query: 121 gaatcagagtacaacacagaacccagagtcttgaagctggaaggaatcttaaacagtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatcagagtacaacacagaacccagagtcttgaagctggaaggaatcttaaacagtgaa 380

                                                                       
Query: 181 gtcactctttggtttatatgccagggtgtaacaagaatggcagccaacagtccagagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcactctttggtttatatgccagggtgtaacaagaatggcagccaacagtccagagcca 440

                                                                       
Query: 241 gttaatcatcttaaccaaagtgttggacctgctcctggcccagggaccaccacactctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttaatcatcttaaccaaagtgttggacctgctcctggcccagggaccaccacactctgg 500

                                                                       
Query: 301 acttcattttgtaacgcgaatgaagtcttccctacctgacttccccatctaactttcttt 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttcattttgtaacgtgaatgaagtcttccctacctgacttccccatctaactttcttt 560

                                                                       
Query: 361 cagactttctgctgataggctgccctaggtttctcttagagtgatgaaacactcttcccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagactttctgctgataggctgccctaggtttctcttagagtgatgaaacactcttcccc 620

                                                                       
Query: 421 aaggagactccaggagaaatgtggttatctggctagcattgccaggccatagttcatcat 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 621 aaggagactccgggagaaatgtggttatctggctagcattgccaggccacagctcatcat 680

                         
Query: 481 ggagggcaggaagg 494
           ||||||||||||||
Sbjct: 681 ggagggcaggaagg 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)