BAC Information

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BAC

Clone NameMSMg01-118L01
Chromosome14 (Build37)
Map Location 51,682,207 - 51,682,591
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12
Downstream geneOlfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118L01.T7 (MSMg01no118_l01.b1)MSMg01-118L01.TJ (MSMg01no118_l01.g1)
ACCAG329499AG329500
length719700
length of high quality
(start - end)
443 (92 - 534)331 (79 - 409)
definitionCHROMAT_FILE: MSMg01no118_l01.b1 PHD_FILE: MSMg01no118_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:37 2005CHROMAT_FILE: MSMg01no118_l01.g1 PHD_FILE: MSMg01no118_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCAAATAATGANGGNGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCGCGGAATTCCAGGTTTACGCTCCCACACCTGGCT
TTAGTCTTACTTTTTGTCTAACATCTTTTCCATAGTATAAGACAAATAAA
CAGCAAGAAATGTCATTAGCCAAAAATAAATAAAAAAATAAAAGCTCTTC
AAAACCTAAATGTGGTAAATGCACATTAAGATGAGATATAATGACACTGA
AGGGAAAGAGCCCCAATCTCATTGGCACAGGGGACAACTTCCTGAACAGA
ACACCAATGGCTCAGGCTCTAAGATCAACAATTGATAAATGGTTACCTCA
TGAAACTGGAAAGATTCTGTTCAGGCAAAAGACACAGTCAATAGGACAAA
CTGGCAACCTACACAATGGGGAAAAAATTGTCACTAATCCCACTGATATC
CGAAATATATAAAGAACTCAAGCTAACCACTAATAAACCAAATAACCCAA
TTAAAAAATGGGGTACAGAGCTAAACAGAGAATTCACAACAGAAGAATCT
CGAATGGCTGAGAAGCACTTAAAAGAAAAGATCAAAGTTCTTACTCATCA
CGGAAATACAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGA
ATGGCTAACATCAAAAATTCCCGTGACAGCAGATGCTGGTGAGGATGCGG
AGAAAGATGAACACTCCTC
NNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACATCATGGGTCAGCAAAT
GTGAGGACGCTTGCTTCCTTCCTCCCTCAAAGCCCTTCTGTATGGGGACA
TGGCTGAAGGAATCCTTGGTAGTAAAGCAGTTTTTTTAGGAACACACTTC
TCACCAGAGCGTCCCTTACACTAACTCCCCATGAGGAAAATTTAACCACT
TGCTATTGGAATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGTC
CATCTGTCTGTGGTTGTATGTGTCTGTGTGTGTGTGTTTGTGTGTGCCCA
TGTGCTCATGCGTGCACGAGCGCACACCTGTTTGTATGTATGAGTATGTG
CTTGTGTATGTGTGCGCATGCACATGTGCATGCTTTTGTTGAGTTACTTA
TTAGAACAGATTGCATTACACAGACAGAGTTCTAAGAACTCTGGAGGACA
TCTCAGTACTAACAGCTATTGCTTGCCAAAATCTCCTAAGGCGCTGTCAG
CATATAAATCGAGGGAGTCAGAGGTACAACAATGATCTTAACGCCTGCGA
TGGTGGGAAAACAACATGTTTCCCCTCTTTCCGCTTATCTTTTCTGACCC
GGTGAATATTTCACGCTCTTCGGCTTCCTCACACACTTTCCCCACATCAC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_l01.g1 MSMg01no118_l01.g1 CHROMAT_FILE:
MSMg01no118_l01.g1 PHD_FILE: MSMg01no118_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:37 2005
         (331 letters)



>mm_chr14_51682207_51682937
          Length = 731

 Score =  455 bits (235), Expect = e-132
 Identities = 318/385 (82%), Gaps = 62/385 (16%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacatcatgggtcagcaaatgtgaggacgcttgcttccttcctccctcaaagcccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagacatcatgggtcagcaaatgtgaggacgcttgcttccttcctccctcaaagcccttc 326

                                                                       
Query: 61  tgtatggggacatggctgaaggaatccttggtagtaaagcagtttttttaggaacacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtatggggacatggctgaaggaatccttggtagtaaagcagtttttttaggaacacact 266

                                                                       
Query: 121 tctcaccagagcgtcccttacactaactccccatgaggaaaatttaaccacttgctattg 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 265 tctcaccagagcgtcccttacactaactccccatgaggaaattttaaccacttgctactg 206

                                                                       
Query: 181 gaatt----------------------------------gagagagagagagagagagag 206
           |||||                                  |||||||||||||||||||||
Sbjct: 205 gaatttataaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagag 146

                                                                       
Query: 207 agagagagaga--------------------------cagtccatctgtctgtggttgta 240
           |||||||||||                          |||||||||||||||||||||||
Sbjct: 145 agagagagagagagagagagagagagagagagagagtcagtccatctgtctgtggttgta 86

                                                                       
Query: 241 tgtgtctgtgtgtgtgtgtttgtgtgtgcccatgtgctcatgcgtgcacgagcgcacacc 300
           |||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct: 85  tgtgtctgtgtgtgtgtgtttgtgtgtgtccgtgtcctcatgcgtgcacgagcgcacacc 26

                                    
Query: 301 tgt--ttgtatgtatgagtatgtgc 323
           |||  ||||||||||||||||||||
Sbjct: 25  tgtgtttgtatgtatgagtatgtgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)